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GeneChip Poplar Genome Array

The GeneChip Poplar Genome Array is designed specifically to monitor gene expression in Poplar (Populus sp.).

Part # Description Unit Size Your Price (USD)
Qty
900728
GeneChip Poplar Genome Array
contains 2 arrays    Please Inquire
900729
GeneChip Poplar Genome Array
contains 6 arrays    Please Inquire
900730
GeneChip Poplar Genome Array
contains 30 arrays    Please Inquire
     

The GeneChip® Poplar Genome Array is designed specifically to monitor gene expression in Poplar (Populus sp.). In total, the Poplar Genome Array contains more than 61,000 probe sets representing over 56,000 transcripts and gene predictions.

This array was created in collaboration with leading poplar researchers through the Affymetrix GeneChip® Consortia Program and was designed based on content from UniGene Build #6 (March 16, 2005) and from GenBank® mRNAs and ESTs for all Populus species up to April 26, 2005. Additional array design content was derived from the predicted gene set v1.1 from the Populus genome project (P. trichocarpa), led by the U.S. Department of Energy and based at the Joint Genome Institute (JGI), Walnut Creek, CA (download date May 4, 2005).

Instrument and Software Requirements

*GeneChip Scanner 3000 High-Resolution Update is standard on all instruments shipped starting in September 2003 with serial number series 502. Previous versions (serial number series 501) will require the 00-0110 GeneChip Scanner 3000 High-Resolution Update to be installed.

For research use only. Not for use in diagnostic procedures.

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Data Sheets

Poplar Genome Array (pdf, 120 KB)

Library Files

Poplar Genome Array (zip, 30 MB)

Manuals

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

Probe Set Data in MAGE-ML Format

3' IVT Express Kit User Manual (pdf, 1.6 MB)

HT 3' IVT Express Kit (pdf 5.93 MB)

Package Inserts

Poplar Genome Array (pdf, 492 KB)

Protocol, Long

Gene Expression Arrays

Other

Fluidics Scripts

NetAffx Alignment Files

Poplar Alignments To Genome, PSL Format (6 MB 11/17/06)

NetAffx Annotation Files

Poplar Annotations, CSV format, Release 32 (9 MB 06/09/11)

Poplar BLASTP annotations, CSV Format, Release 31 (2 MB 08/11/10)

Poplar Annotations, CSV format, Release 31 (9 MB 08/11/10)

Poplar Annotations, MAGE-ML XML Format, Release 31 (52 MB 08/11/10)

Poplar Annotations, MAGE-ML XML Format, Release 32 (49 MB 06/09/11)

Poplar Annotations, CSV format, Release 30 (8 MB 11/15/09)

Poplar Annotations, MAGE-ML XML Format, Release 30 (48 MB 11/15/09)

Poplar BLASTP annotations, CSV Format, Release 30 (229 KB 11/16/09)

Sequence Files

Poplar Consensus Sequences, FASTA (18 MB 08/20/08)

Poplar Control Sequences, FASTA (53 KB 12/20/05)

Poplar Probe Sequences, FASTA (13 MB 08/20/08)

Poplar Probe Sequences, Tabular (11 MB 08/20/08)

Poplar Target Sequences, FASTA (8 MB 08/20/08)

Archived NetAffx Annotation Files

Poplar Annotations, MAGE-ML XML, Release 20 (41 MB 06/15/07)

Poplar Annotations, CSV, Release 20 (5 MB 05/31/07)

Poplar Annotations, BLASTP, Release 20 (3 KB 12/20/05)

Poplar Annotations, CSV format, Release 21 (5 MB 05/31/07)

Poplar Annotations, MAGE-ML XML format, Release 21 (41 MB 06/15/07)

Poplar Annotations, CSV format, Release 22 (5 MB 05/31/07)

Poplar Annotations, MAGE-ML XML Format, Release 22 (42 MB 06/15/07)

Poplar Annotations, CSV format, Release 23 (5 MB 07/12/07)

Poplar Annotations, MAGE-ML XML Format, Release 23 (42 MB 07/12/07)

Poplar Annotations, CSV format, Release 24 (4 MB 11/06/07)

Poplar Annotations, MAGE-ML XML Format, Release 24 (50 MB 11/06/07)

Poplar BLASTP annotations, CSV Format, Release 24 (5 MB 11/06/07)

Poplar Annotations, CSV format, Release 25 (5 MB 03/18/08)

Poplar Annotations, MAGE-ML XML Format, Release 25 (51 MB 03/18/08)

Poplar BLASTP annotations, CSV Format, Release 25 (5 MB 03/18/08)

Poplar Annotations, CSV format, Release 26 (5 MB 07/08/08)

Poplar Annotations, MAGE-ML XML Format, Release 26 (52 MB 07/08/08)

Poplar BLASTP annotations, CSV Format, Release 26 (6 MB 07/08/08)

Poplar Annotations, CSV format, Release 27 (5 MB 11/30/08)

Poplar Annotations, MAGE-ML XML Format, Release 27 (52 MB 11/24/08)

Poplar BLASTP annotations, CSV Format, Release 27 (6 MB 11/24/08)

Poplar Annotations, CSV format, Release 28 (5 MB 03/12/09)

Poplar Annotations, MAGE-ML XML Format, Release 28 (53 MB 03/12/09)

Poplar BLASTP annotations, CSV Format, Release 28 (6 MB 03/04/09)

Poplar Annotations, CSV format, Release 29 (8 MB 07/01/09)

Poplar Annotations, MAGE-ML XML Format, Release 29 (48 MB 07/01/09)

Poplar BLASTP annotations, CSV Format, Release 29 (289 KB 07/01/09)

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