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GeneChip Plasmodium/Anopheles Genome Array

The GeneChip Plasmodium/Anopheles Genome Array includes probe sets to over 4,300 Plasmodium falciparum transcripts and approximately 14,900 Anopheles gambiae transcripts.

Part # Description Unit Size Your Price (USD)
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900511
GeneChip Plasmodium/Anopheles Genome Array
contains 2 arrays    Please Inquire
900512
GeneChip Plasmodium/Anopheles Genome Array
contains 6 arrays    Please Inquire
     

The GeneChip® Plasmodium/Anopheles Genome Array includes probe sets to over 4,300 Plasmodium falciparum transcripts and approximately 14,900 Anopheles gambiae transcripts. The Plasmodium/Anopheles Genome Array was developed in collaboration with the Malaria Research Institute at the Johns Hopkins Bloomberg School of Public Health.

P. falciparum sequence information for this array was collected primarily from PlasmodB (version 4.1, June 2003) and augmented with sequence information from GenBank® and dbEST. Sequence information for A. gambiae was drawn primarily from Ensembl (Build 2, 2003) and augmented with sequence information from GenBank and dbEST.

Note: The DsRed probe set is provided with permission from BD Biosciences, and BD Biosciences grants users a limited license to utilize this probe set only on the Affymetrix array. Other uses of the probe set, or other DsRed sequence or sequences, require a license from BD Biosciences.

For research use only. Not for use in diagnostic procedures.

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Application Notes

Microarray Applications in Infectious Disease (pdf, 252 KB)

Data Sheets

Plasmodium/Anopheles Genome Array (pdf, 85 KB)

Library Files

Plasmodium/Anopheles Genome Array (zip, 12 MB)

Manuals

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

Probe Set Data in MAGE-ML Format

3' IVT Express Kit User Manual (pdf, 1.6 MB)

HT 3' IVT Express Kit (pdf 5.93 MB)

Package Inserts

Plasmodium/Anopheles Genome Array (pdf, 494 KB)

Protocol, Long

Gene Expression Arrays

Other

Fluidics Scripts

NetAffx Alignment Files

Plasmodium_Anopheles Alignments To Genome, PSL Format (2 MB 11/17/06)

NetAffx Annotation Files

Plasmodium_Anopheles Orthologs/Homologs, CSV Format, Release 31 (82 KB 08/11/10)

Plasmodium_Anopheles Annotations, CSV format, Release 32 (3 MB 06/22/11)

Plasmodium_Anopheles BLASTP annotations, CSV Format, Release 31 (19 KB 08/11/10)

Plasmodium_Anopheles Annotations, MAGE-ML XML Format, Release 31 (22 MB 08/23/10)

Plasmodium_Anopheles Annotations, CSV format, Release 30 (3 MB 11/15/09)

Plasmodium_Anopheles Annotations, MAGE-ML XML Format, Release 30 (22 MB 11/15/09)

Plasmodium_Anopheles BLASTP annotations, CSV Format, Release 30 (19 KB 11/16/09)

Plasmodium_Anopheles Orthologs/Homologs, CSV Format, Release 30 (83 KB 11/15/09)

Plasmodium_Anopheles Annotations, CSV format, Release 31 (3 MB 08/23/10)

Plasmodium_Anopheles Annotations, MAGE-ML XML Format, Release 32 (29 MB 06/22/11)

Plasmodium_Anopheles Orthologs/Homologs, CSV Format, Release 32 (3 MB 06/22/11)

Plasmodium_Anopheles BLASTP annotations, CSV Format, Release 32 (39 KB 06/09/11)

Sequence Files

Plasmodium_Anopheles Consensus Sequences, FASTA (11 MB 08/20/08)

Plasmodium_Anopheles Control Sequences, FASTA (56 KB 02/09/04)

Plasmodium_Anopheles Probe Sequences, FASTA (5 MB 08/20/08)

Plasmodium_Anopheles Probe Sequences, Tabular (4 MB 08/20/08)

Plasmodium_Anopheles Target Sequences, FASTA (3 MB 08/20/08)

Archived NetAffx Annotation Files

Plasmodium_Anopheles Annotations, MAGE-ML XML, Release 20 (23 MB 06/15/07)

Plasmodium_Anopheles Annotations, CSV, Release 20 (3 MB 05/31/07)

Plasmodium_Anopheles Annotations, CSV format, Release 21 (3 MB 05/31/07)

Plasmodium_Anopheles Annotations, MAGE-ML XML format, Release 21 (23 MB 06/15/07)

Plasmodium_Anopheles BLASTP annotations, CSV format, Release 21 (1 MB 11/15/06)

Plasmodium_Anopheles Orthologs/Homologs, CSV format, Release 21 (63 KB 11/30/06)

Plasmodium_Anopheles Annotations, CSV format, Release 22 (3 MB 05/31/07)

Plasmodium_Anopheles Annotations, MAGE-ML XML Format, Release 22 (23 MB 06/15/07)

Plasmodium_Anopheles BLASTP annotations, CSV Format, Release 22 (1 MB 03/09/07)

Plasmodium_Anopheles Orthologs/Homologs, CSV Format, Release 22 (68 KB 03/09/07)

Plasmodium_Anopheles Annotations, CSV format, Release 23 (3 MB 07/12/07)

Plasmodium_Anopheles Annotations, MAGE-ML XML Format, Release 23 (23 MB 07/12/07)

Plasmodium_Anopheles BLASTP annotations, CSV Format, Release 23 (1 MB 07/12/07)

Plasmodium_Anopheles Orthologs/Homologs, CSV Format, Release 23 (67 KB 07/12/07)

Plasmodium_Anopheles Annotations, CSV format, Release 24 (3 MB 11/06/07)

Plasmodium_Anopheles Annotations, MAGE-ML XML Format, Release 24 (23 MB 11/06/07)

Plasmodium_Anopheles BLASTP annotations, CSV Format, Release 24 (1 MB 11/06/07)

Plasmodium_Anopheles Orthologs/Homologs, CSV Format, Release 24 (68 KB 11/06/07)

Plasmodium_Anopheles Annotations, CSV format, Release 25 (3 MB 03/19/08)

Plasmodium_Anopheles Annotations, MAGE-ML XML Format, Release 25 (23 MB 03/19/08)

Plasmodium_Anopheles BLASTP annotations, CSV Format, Release 25 (803 KB 03/18/08)

Plasmodium_Anopheles Orthologs/Homologs, CSV Format, Release 25 (69 KB 03/18/08)

Plasmodium_Anopheles Annotations, CSV format, Release 26 (3 MB 07/08/08)

Plasmodium_Anopheles Annotations, MAGE-ML XML Format, Release 26 (21 MB 07/08/08)

Plasmodium_Anopheles BLASTP annotations, CSV Format, Release 26 (42 KB 07/08/08)

Plasmodium_Anopheles Orthologs/Homologs, CSV Format, Release 26 (78 KB 07/08/08)

Plasmodium_Anopheles Annotations, CSV format, Release 27 (3 MB 11/30/08)

Plasmodium_Anopheles Annotations, MAGE-ML XML Format, Release 27 (24 MB 11/24/08)

Plasmodium_Anopheles BLASTP annotations, CSV Format, Release 27 (1 MB 11/24/08)

Plasmodium_Anopheles Orthologs/Homologs, CSV Format, Release 27 (82 KB 11/24/08)

Plasmodium_Anopheles Annotations, CSV format, Release 28 (3 MB 03/12/09)

Plasmodium_Anopheles Annotations, MAGE-ML XML Format, Release 28 (22 MB 03/12/09)

Plasmodium_Anopheles BLASTP annotations, CSV Format, Release 28 (20 KB 03/04/09)

Plasmodium_Anopheles Orthologs/Homologs, CSV Format, Release 28 (89 KB 03/12/09)

Plasmodium_Anopheles Annotations, CSV format, Release 29 (3 MB 07/01/09)

Plasmodium_Anopheles Annotations, MAGE-ML XML Format, Release 29 (22 MB 07/01/09)

Plasmodium_Anopheles BLASTP annotations, CSV Format, Release 29 (11 KB 07/01/09)

Plasmodium_Anopheles Orthologs/Homologs, CSV Format, Release 29 (86 KB 07/01/09)

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