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GeneChip Drosophila Tiling 2.0R Array

The Drosophila Tiling 2.0R Array builds on the content of its predecessor and includes additional sequences that have since become available through the Berkeley Drosophila Genome Project (BDGP).

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901021
GeneChip Drosophila Tiling 2.0R Array
contains 6 arrays    Please Inquire
     

The GeneChip® Drosophila Tiling 2.0R Array is Affymetrix' second-generation Drosophila Tiling Array. GeneChip Drosophila Tiling Arrays are versatile, whole-genome tools that researchers have successfully used to map novel areas of transcription and to interpret chromatin IP results on a genome-wide level.

The Drosophila Tiling 2.0R Array builds on the content of its predecessor and includes additional sequences that have since become available through the Berkeley Drosophila Genome Project (BDGP). The majority of the new sequences are located in the heterochromatin regions of the Drosophila genome.

Array Features

  • Up-to-date sequence content
    • Based on BDGP genome release 5
    • Release 5 improvements include heterochromatin regions, which contain several hundred known and predicted genes
  • New design strategy enables a complete representation of the genome
    • Includes repetitive regions
    • No repeat masking used in chip design
    • Novel tiling array design (see the Affymetrix White Paper, Drosophila Tiling 2.0R Array Design and Library files)
    • 25-mer oligonucleotide probes interrogate the entire genome with an average 38-base-pair resolution
  • Flexible analysis options
    • Default analysis library file (bpmap file) excludes repetitive regions as defined by FlyBase 5.2 and UCSC Genome Browser repeat annotations
    • Entire array content analysis library file available upon request through Customer Support

Note: Due to the different content, design strategy and analysis library file content, direct comparisons of results between the Drosophila Tiling 1.0R Array and the Drosophila Tiling 2.0R Array are not recommended.

Instrument and Software Requirements

GeneChip® Scanner 3000 7G
GeneChip® Operating Software (GCOS) version 1.0 or greater

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For research use only. Not for use in diagnostic procedures.

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Application Notes

ChIP-on-chip (pdf, 487 KB)

Library Files

Drosophila Tiling 2.0R Array (zip, 114 MB)

GeneChip Tiling Arrays - Data Analysis Library File Updates

Manuals

GeneChip® Eukaryotic Double Strand Whole Transcript Protocol - for human and mouse tiling arrays (pdf, 160 KB)

GeneChip® Eukaryotic Double Strand Whole Transcript Protocol - for Arabidopsis, C. elegans, Drosophila, and yeast tiling arrays (pdf, 174 KB)

Affymetrix® Chromatin Immunoprecipitation Assay Protocol (pdf, 424 KB)

Package Inserts

Drosophila Tiling 2.0R Array (pdf, 127 KB)

Sample Data

Tiling Array Sample Data

Tutorials

Tiling Analysis Software Tutorial

White Papers

Drosophila Tiling 2.0R Array Design and Library files (pdf, 59 KB)

Archived Additional Support

Whole Transcript (WT) Double-Stranded Target Assay (pdf, 751 KB)

Archived Presentations

Webinar, Six-part ChIP-on-chip Symposia Series

Scientific Forum, 1st European ChIP-on-chip

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