GeneChip Drosophila Genome 2.0 Array
The GeneChip Drosophila Genome 2.0 Array is a microarray tool for studying expression of Drosophila melanogaster transcripts.
The GeneChip® Drosophila Genome 2.0 Array is a microarray tool for studying expression of Drosophila melanogaster transcripts.
- Provides comprehensive coverage of the transcribed Drosophila genome on a single array
- Comprised of 18,880 probe sets, analyzing over 18,500 transcripts
- Sophisticated bioinformatics tools available through the NetAffx™ Analysis Center to rapidly obtain biologically meaningful results
Array Profile
Sequences used in the design of the GeneChip Drosophila Genome 2.0 Array were selected from Flybase version 3.1.
Oligonucleotide probes complementary to each corresponding sequence are synthesized in situ on the arrays. Fourteen pairs of oligonucleotide probes are used to measure the level of transcription of each sequence.
Instrument Software Requirements
- GeneChip® Scanner 3000, enabled for High-Resolution Scanning*
- GeneChip® Operating Software (GCOS) v1.1.1, which contains the High-Resolution Scanning Update
* GeneChip Scanner 3000 High-Resolution Update is standard on all instruments shipped starting in September 2003 with serial number series 502. Previous versions (serial number series 501) will require the 00-0110 GeneChip Scanner 3000 High-Resolution Update to be installed.
For more information, please review the data sheet (pdf, 700 KB).
For research use only. Not for use in diagnostic procedures.
Comparison Sheets / Array Comparisons
Drosophila Genome to Drosophila Genome 2.0, Best Match (zip, 158 KB)
Drosophila Genome to Drosophila Genome 2.0, Complex Match (zip, 512 KB)
Drosophila Genome to Drosophila Genome 2.0, Good Match (zip, 159 KB)
Drosophila Genome to Drosophila Genome 2.0, No Match (zip, 2 KB)
Comparison Spreadsheets User's Guide (pdf, 82 KB)
Data Sheets
Drosophila Genome 2.0 Array (pdf, 120 KB)
Library Files
Drosophila Genome 2.0 Array (zip, 13 MB)
Manuals
Probe Set Data in MAGE-ML Format
3' IVT Express Kit User Manual (pdf, 1.16 MB)
HT 3' IVT Express Kit (pdf 5.93 MB)
Package Inserts
Drosophila Genome 2.0 Array ( pdf, 492 KB)
Protocol, Long
Technical Notes
GeneChip Expression Platform: Comparison, Evolution, and Performance (pdf, 269 KB)
Other
NetAffx Alignment Files
Drosophila_2 Alignments To Genome, PSL Format (2 MB 11/17/06)
NetAffx Annotation Files
Drosophila_2 BLASTP annotations, CSV Format, Release 31 (22 KB 08/11/10)
Drosophila_2 Orthologs/Homologs, CSV Format, Release 31 (3 MB 08/11/10)
Drosophila_2 Annotations, CSV format, Release 32 (8 MB 06/09/11)
Drosophila_2 Annotations, CSV format, Release 31 (8 MB 08/23/10)
Drosophila_2 Orthologs/Homologs, CSV Format, Release 32 (3 MB 06/09/11)
Drosophila_2 BLASTP annotations, CSV Format, Release 32 (101 KB 06/09/11)
Drosophila_2 Annotations, CSV format, Release 30 (8 MB 11/15/09)
Drosophila_2 Annotations, MAGE-ML XML Format, Release 30 (35 MB 11/15/09)
Drosophila_2 BLASTP annotations, CSV Format, Release 30 (31 KB 11/16/09)
Drosophila_2 Orthologs/Homologs, CSV Format, Release 30 (3 MB 11/15/09)
Drosophila_2 Annotations, MAGE-ML XML Format, Release 32 (35 MB 06/09/11)
Drosophila_2 Annotations, MAGE-ML XML Format, Release 31 (35 MB 08/23/10)
Sequence Files
Drosophila_2 Probe Sequences, FASTA (5 MB 08/20/08)
Drosophila_2 Probe Sequences, Tabular (5 MB 08/20/08)
Drosophila_2 Target Sequences, FASTA (3 MB 08/20/08)
Drosophila_2 Control Sequences FASTA Format (70 KB 06/24/04)
Drosophila_2 Consensus Sequences FASTA Format (10 MB 08/20/08)
Archived NetAffx Alignment Files
Drosophila_2 Alignments to Genome, PSL (2 MB 12/04/08)
Archived NetAffx Annotation Files
Drosophila_2 Annotations, MAGE-ML XML, Release 20 (33 MB 06/15/07)
Drosophila_2 Annotations, CSV, Release 20 (6 MB 05/31/07)
Drosophila_2 Annotations, CSV format, Release 21 (6 MB 05/31/07)
Drosophila_2 Annotations, MAGE-ML XML format, Release 21 (33 MB 06/15/07)
Drosophila_2 BLASTP annotations, CSV format, Release 21 (1 MB 11/15/06)
Drosophila_2 Orthologs/Homologs, CSV format, Release 21 (2 MB 11/30/06)
Drosophila_2 Annotations, CSV format, Release 22 (7 MB 05/31/07)
Drosophila_2 Annotations, MAGE-ML XML Format, Release 22 (32 MB 06/15/07)
Drosophila_2 BLASTP annotations, CSV Format, Release 22 (56 KB 03/09/07)
Drosophila_2 Orthologs/Homologs, CSV Format, Release 22 (2 MB 03/09/07)
Drosophila_2 Annotations, CSV format, Release 23 (7 MB 07/12/07)
Drosophila_2 Annotations, MAGE-ML XML Format, Release 23 (32 MB 07/12/07)
Drosophila_2 BLASTP annotations, CSV Format, Release 23 (55 KB 07/12/07)
Drosophila_2 Orthologs/Homologs, CSV Format, Release 23 (2 MB 07/12/07)
Drosophila_2 Annotations, CSV format, Release 24 (7 MB 11/06/07)
Drosophila_2 Annotations, MAGE-ML XML Format, Release 24 (32 MB 11/06/07)
Drosophila_2 BLASTP annotations, CSV Format, Release 24 (22 KB 11/06/07)
Drosophila_2 Orthologs/Homologs, CSV Format, Release 24 (2 MB 11/06/07)
Drosophila_2 Annotations, CSV format, Release 25 (7 MB 03/18/08)
Drosophila_2 Annotations, MAGE-ML XML Format, Release 25 (32 MB 03/18/08)
Drosophila_2 BLASTP annotations, CSV Format, Release 25 (29 KB 03/18/08)
Drosophila_2 Orthologs/Homologs, CSV Format, Release 25 (2 MB 03/18/08)
Drosophila_2 Annotations, CSV format, Release 26 (7 MB 07/08/08)
Drosophila_2 Annotations, MAGE-ML XML Format, Release 26 (32 MB 07/08/08)
Drosophila_2 BLASTP annotations, CSV Format, Release 26 (60 KB 07/08/08)
Drosophila_2 Orthologs/Homologs, CSV Format, Release 26 (2 MB 07/08/08)
Drosophila_2 Annotations, CSV format, Release 27 (7 MB 11/30/08)
Drosophila_2 Annotations, MAGE-ML XML Format, Release 27 (32 MB 11/24/08)
Drosophila_2 BLASTP annotations, CSV Format, Release 27 (69 KB 11/24/08)
Drosophila_2 Orthologs/Homologs, CSV Format, Release 27 (2 MB 11/24/08)
Drosophila_2 Annotations, CSV format, Release 28 (7 MB 03/12/09)
Drosophila_2 Annotations, MAGE-ML XML Format, Release 28 (33 MB 03/12/09)
Drosophila_2 BLASTP annotations, CSV Format, Release 28 (39 KB 03/04/09)
Drosophila_2 Orthologs/Homologs, CSV Format, Release 28 (3 MB 03/12/09)
Drosophila_2 Annotations, CSV format, Release 29 (8 MB 07/01/09)
Drosophila_2 Annotations, MAGE-ML XML Format, Release 29 (34 MB 07/01/09)
Drosophila_2 BLASTP annotations, CSV Format, Release 29 (25 KB 07/01/09)
Drosophila_2 Orthologs/Homologs, CSV Format, Release 29 (3 MB 07/01/09)
Required Products