GeneChip Chicken Genome Array
The GeneChip Chicken Genome Array is a key research tool for the study of chicken genomics and chicken viral pathogens.
The GeneChip® Chicken Genome Array is a key research tool for the study of chicken genomics and chicken viral pathogens.
- This array contains comprehensive coverage of 32,773 transcripts corresponding to over 28,000 chicken genes. The Chicken Genome Array also contains 689 probe sets for detecting 684 transcripts from 17 avian viruses.
- Use the Power of the Probe Set and get multiple independent measurements for each transcript that deliver the greatest accuracy and reproducibility of any microarray platform.
- GeneChip® System: richer data, sharper insights, better decisions.
Array Profile
Sequence information for the GeneChip Chicken Genome Array can be used to study gene expression of 33,457 chicken and viral transcripts. Species covered include Gallus gallus (chicken) and 17 avian viruses. Sequence information for this array includes public content from GenBank®, UniGene (Build 18; 15 May 2004), and Ensembl (version 1, released May 2004). Probe sets on the array were designed with 11 oligonucleotide pairs to detect each transcript.
Instrument and Software Requirements
GeneChip® Scanner 3000, enabled for High-Resolution Scanning*
GeneChip® Operating Software (GCOS) including the GeneChip Scanner 3000 High-Resolution Scanning Patch
*GeneChip Scanner 3000 High-Resolution Update is standard on all instruments shipped starting in September 2003 with serial number series 502. Previous versions, serial number series 501, will require the 00-0110 GeneChip Scanner 3000 High-Resolution Update to be installed.
The Chicken Genome Array was created within the Affymetrix GeneChip® Consortia Program.
For research use only. Not for use in diagnostic procedures.
Data Sheets
Chicken Genome Array (pdf, 84KB)
Library Files
Chicken Genome Array Array (zip, 20 MB)
Manuals
Probe Set Data in MAGE-ML Format
3' IVT Express Kit User Manual (pdf, 1.6 MB)
HT 3' IVT Express Kit (pdf 8.41 MB)
Package Inserts
Chicken Genome Array (pdf, 492 KB)
Protocol, Long
Other
NetAffx Alignment Files
Chicken Alignments To Genome, PSL Format (5 MB 11/17/06)
NetAffx Annotation Files
Chicken Annotations, CSV format, Release 32 (7 MB 06/09/11)
Chicken BLASTP annotations, CSV Format, Release 31 (1 KB 08/11/10)
Chicken Annotations, CSV format, Release 31 (7 MB 08/11/10)
Chicken Annotations, MAGE-ML XML Format, Release 31 (56 MB 08/11/10)
Chicken Annotations, MAGE-ML XML Format, Release 32 (56 MB 06/09/11)
Chicken Orthologs/Homologs, CSV Format, Release 31 (8 MB 08/11/10)
Chicken Orthologs/Homologs, CSV Format, Release 32 (8 MB 06/09/11)
Chicken Annotations, CSV format, Release 30 (7 MB 11/15/09)
Chicken Annotations, MAGE-ML XML Format, Release 30 (56 MB 11/15/09)
Chicken BLASTP annotations, CSV Format, Release 30 (1 KB 11/16/09)
Chicken Orthologs/Homologs, CSV Format, Release 30 (8 MB 11/15/09)
Chicken BLASTP annotations, CSV Format, Release 32 (1 KB 06/09/11)
Sequence Files
Chicken Consensus Sequences, FASTA (18 MB 08/20/08)
Chicken Control Sequences, FASTA (52 KB 12/10/04)
Chicken Probe Sequences, FASTA (8 MB 08/20/08)
Chicken Probe Sequences, Tabular (7 MB 08/20/08)
Chicken Target Sequences, FASTA (5 MB 08/20/08)
Archived NetAffx Annotation Files
Chicken Annotations, MAGE-ML XML, Release 20 (55 MB 06/15/07)
Chicken Annotations, CSV, Release 20 (7 MB 05/31/07)
Chicken Annotations, Orthologs, Release 20 (6 MB 08/21/06)
Chicken Annotations, CSV format, Release 25 (7 MB 03/18/08)
Chicken Annotations, MAGE-ML XML Format, Release 25 (50 MB 03/18/08)
Chicken Orthologs/Homologs, CSV Format, Release 25 (7 MB 03/18/08)
Chicken BLASTP annotations, CSV Format, Release 25 (1 KB 03/18/08)
Chicken Annotations, CSV format, Release 21 (8 MB 05/31/07)
Chicken Annotations, MAGE-ML XML format, Release 21 (50 MB 06/15/07)
Chicken BLASTP annotations, CSV format, Release 21 (470 KB 11/15/06)
Chicken Orthologs/Homologs, CSV format, Release 21 (5 MB 11/30/06)
Chicken Annotations, CSV format, Release 22 (7 MB 05/31/07)
Chicken Annotations, MAGE-ML XML Format, Release 22 (51 MB 06/15/07)
Chicken BLASTP annotations, CSV Format, Release 22 (533 KB 03/09/07)
Chicken Orthologs/Homologs, CSV Format, Release 22 (6 MB 03/09/07)
Chicken Annotations, CSV format, Release 23 (7 MB 07/12/07)
Chicken Annotations, MAGE-ML XML Format, Release 23 (51 MB 07/12/07)
Chicken BLASTP annotations, CSV Format, Release 23 (243 KB 07/12/07)
Chicken Orthologs/Homologs, CSV Format, Release 23 (7 MB 07/12/07)
Chicken Annotations, CSV format, Release 24 (7 MB 11/06/07)
Chicken Annotations, MAGE-ML XML Format, Release 24 (50 MB 11/06/07)
Chicken BLASTP annotations, CSV Format, Release 24 (2 KB 11/06/07)
Chicken Orthologs/Homologs, CSV Format, Release 24 (7 MB 11/06/07)
Chicken Annotations, CSV format, Release 26 (7 MB 07/08/08)
Chicken Annotations, MAGE-ML XML Format, Release 26 (51 MB 07/08/08)
Chicken BLASTP annotations, CSV Format, Release 26 (3 KB 07/08/08)
Chicken Orthologs/Homologs, CSV Format, Release 26 (7 MB 07/08/08)
Chicken Annotations, CSV format, Release 27 (7 MB 11/30/08)
Chicken Annotations, MAGE-ML XML Format, Release 27 (51 MB 11/24/08)
Chicken BLASTP annotations, CSV Format, Release 27 (190 KB 11/24/08)
Chicken Orthologs/Homologs, CSV Format, Release 27 (7 MB 11/24/08)
Chicken Annotations, CSV format, Release 28 (7 MB 03/12/09)
Chicken Annotations, MAGE-ML XML Format, Release 28 (54 MB 03/12/09)
Chicken BLASTP annotations, CSV Format, Release 28 (4 KB 03/04/09)
Chicken Orthologs/Homologs, CSV Format, Release 28 (8 MB 03/12/09)
Chicken Annotations, CSV format, Release 29 (7 MB 07/01/09)
Chicken Annotations, MAGE-ML XML Format, Release 29 (54 MB 07/01/09)
Chicken BLASTP annotations, CSV Format, Release 29 (1 KB 07/01/09)
Chicken Orthologs/Homologs, CSV Format, Release 29 (8 MB 07/01/09)
Required Products