Quick Order
Welcome, Guest

NetAffx™ Analysis Center

Get unprecedented access to array content.

The NetAffx™ Analysis Center enables researchers to correlate their GeneChip® array results with array design and annotation information.

  • NetAffx Query Search transcript clusters and probe sets for a particular term or identifier
  • Batch Query Retrieve annotations for a probe list
  • Probe Match Find probe sets that identically match a nucleotide sequence(s)
  • NetAffx Query - Search probe sets for a term or identifier
  • Batch Query - Retrieve annotations for a probe list
  • BLAST - Find probe sets that BLAST align to your sequence(s) through BLAST
  • Probe Match - Find probes that identically match your sequence(s)
  • UCSC Query - Query the UCSC Browser including a custom track for your array of interest.
  • NetAffx Query - Search probe sets for a term or identifier
  • Batch Query - Retrieve annotations for a probe list
  • LD Mapper - Evaluate GenomeWideSNP arrays coverage for your list of rsIDs, genes, or genomic regions
  • UCSC Query - Query the UCSC public genome by position
  • SNP Finder - Search for SNPs between microsatellites

Announcements

New releases, product support, applications

For an archival listing of NetAffx Announcements click here

May 15, 2014

NetAffx DAS server to close down July 1, 2014

The NetAffx DAS server will be closing down as a service on July 1, 2014 as we focus on a new generation of support tools in the NetAffx group. To access a current set of DAS servers, download a current version of Integrated Genome Browser from Bioviz.org.

May 5, 2014

NetAffx Expression Array Comparison Tool, now available!

Explore and search the entire Affymetrix GeneChip Expression array catalog! Simply input gene symbols, pathways, Gene Ontology (GO), or Medical Subject Heading (MeSH) terms. In an instant, this tool returns tailored coverage statistics and an interactive visual interface where you can compare and contrast array content.

April 30, 2014

Release of NetAffx NA34 for WT Expression Arrays

The software pipeline for creating annotations for the NetAffx Gene and Exon products has been substantially rewritten. The result has been higher quality annotations for the probe sets, eliminating many false positive results. As with the rest of the update, this release incorporates new genome builds for mouse (mm10), rat (rn5), chicken (galgal4), and cow (bosTau6).

Click here for full documentation on sources used in NA34.

April 28, 2014

Update for MOUSEDIVm520650 genotyping array

Minor annotation update for MOUSEDIVm520650 array, released as na34.1

January 22, 2014

Release of NetAffx NA34 for IVT Expression and Genotyping Arrays

In addition to the usual updates for biological annotations for transcripts, gene symbols, OMIM, Gene Ontology and over a score of other data sources, NetAffx update NA34 includes new genome builds for mouse (mm10), rat (rn5), chicken (galgal4), and cow (bosTau6) and dbSNP build 137.

The annotation process for WT Gene, WT Exon and HTA arrays has undergone a major overhaul to improve the quality of annotations for these arrays. This has caused a delay in the NA34 support for the Whole Transcript Expression arrays. These updates will be released shortly.

Click here for full documentation on sources used in NA34.

Resources and Help

Selected resources and documentation for getting the most out of the NetAffx™ Analysis Center

NetAffx Help Center
The complete index of documentation available for NetAffx users. Including:

Sources for NetAffx Annotation Updates See documentation for sources and versions of data that went into the annotation updates.

NetAffx FAQ

Glossaries of Annotation Terms (3'IVT Expression, WT Expression, Genotyping)

Whitepapers