 |
 |
|
|
| |
|
The Alumni House, UC Berkeley Campus |
|
|
|
|
|
|
| 6:00pm |
- |
6:30pm
Poster Setup |
| 6:30pm |
- |
9:00pm
Poster Session |
| 7:50am |
- |
8:00am
Welcome/Introduction |
| 8:00am |
- |
9:30am
Session 1A |
| 9:30am |
- |
10:00am
Break |
| 10:00am |
- |
11:30am
Session 1B |
| 11:30am |
- |
1:30pm
Lunch on your own |
| 1:30pm |
- |
3:00pm
Session 2A |
| 3:00pm |
- |
3:30pm
Break |
| 3:30pm |
- |
5:30pm
Session 2B |
| 5:30pm |
- |
Close
of Workshop |
|
|
|
|
|
 |
|
Poster
Presentation Abstracts (zip, 20 KB) |
|
|
|
Poster
presented by Boes, et al. (zip, 34 KB) |
|
|
Poster
presented by Borevitz, et al. (zip, 6 MB) |
|
|
Poster
presented by Collin, et al. (zip, 890 KB) |
|
|
|
|
|
|
Speaker
Presentation Abstracts (zip, 17 KB) |
|
|
Session 1A
Chair: Terry Speed
Rafael Irizarry
Background Adjustment, Normalization, and Summaries: How Do We
Know What’s Best |
|
|
Slides
from Rafael Irizarry's presentation (zip, 1 MB) |
|
|
Andrew James
Sensitivity and Specificity of Five Abundance Estimators for
High-Density Oligonucleotide Microarrays |
|
|
Slides
from Andrew James's presentation (zip, 376 KB) |
|
|
Earl Hubbell
Some M-Estimators for Expression Analysis |
|
|
Slides
from Earl Hubbell's presentation (zip, 268 KB) |
|
|
Session 1B
Harry Zuzan
Generalized SVD Analysis for Improved Estimation of Expression
Indices in the Li-Wong Framework |
|
|
Slides
from Harry Zuzan's presentation (zip, 236 KB) |
|
|
Tzu-Ming Chu
Model-Based Analysis of Affymetrix GeneChip Probe-Level Data |
|
|
Slides
from Tzu-Ming Chu's presentation (zip, 352 KB) |
|
|
Benjamin Rubenstein
Detecting Gene Expression with Oligonucleotide Microarrays |
|
|
Slides
from Benjamin Rubenstein's presentation (zip, 790 KB) |
|
|
Session 2A
Chair: Felix Naef
Xuemin Fang
Further Handling of Cross-Hybridization with Probe Sequence Mapping
Information |
|
|
Slides
from Xuemin Fang's presentation (zip, 276 KB) |
|
|
Wendell Jones
Fragmentation Interference and Its Implication to the Analysis
of Affymetrix Microarray Data |
|
|
Slides
from Wendell Jones's presentation (zip, 542 KB) |
|
|
Teresa Webster
Use of Langmuir Isotherm Models to Predict Probe Response |
|
|
Slides
from Teresa Webster's presentation (zip, 242 KB) |
|
|
Session 2B
Li Zhang
Evaluating Probe Performance on Oligonucleotide Arrays Using
a Free Energy Model of Duplex Formation |
|
|
Slides
from Li Zhang's presentation (zip, 680 KB) |
|
|
Yuhai Tu
Quantitative Noise Characterization and Physical Modeling of
Gene Expression Microarray Data |
|
|
Slides
from Yuhai Tu's presentation (zip, 581 KB) |
|
|
Andrey Ptitsyn
Localized Normalization and Quality Control for High-Density
Oligomucleotide Microarrays |
|
|
Slides
from Andrey Ptitsyn's presentation (zip, 675 KB) |
|
|
Tanya Logvinenko
Normalization Methods for Long Term Studies |
|
|
Slides
from Tanya Logvinenko's presentation (zip, 186 KB) |