# Test data in notation3 http://www.w3.org/DesignIssues/Notation3.html # @prefix affx: . @prefix rdfs: . @prefix owl: . @prefix : <#> . affx:Gene a owl:Class ; owl:hasProperty affx:onStrand ; owl:hasProperty affx:onChr ; owl:hasProperty affx:hasVariant . affx:onStrand a owl:ObjectProperty ; owl:domain affx:Gene ; owl:range rdfs:Literal ; owl:cardinality "1" ; rdfs:comment "The strand on which the gene exists" . affx:onChr a owl:ObjectProperty ; owl:domain affx:Gene ; owl:range rdfs:Literal ; owl:cardinality "1" ; rdfs:comment "The chromosome on which the gene exists" . affx:hasVariant a owl:ObjectProperty ; owl:domain affx:Gene ; owl:range affx:SpliceVariant ; owl:minCardinality "1" ; rdfs:comment "For associating variants to genes" . affx:SpliceVariant a owl:Class ; owl:hasProperty affx:representedBy . affx:representedBy a owl:ObjectProperty ; owl:domain affx:SpliceVariant ; owl:range affx:Transcript ; owl:minCardinality "1" ; rdfs:comment "In this data, each splice variant is represented by one transcript" . affx:Transcript a owl:Class ; owl:hasProperty affx:unigene ; owl:hasProperty affx:translatesTo ; owl:hasProperty affx:fullCds ; owl:hasProperty affx:hasExon ; owl:hasProperty affx:signalPHit ; owl:hasProperty affx:tmHMMHit ; rdfs:comment "A transcript has a CDS region, a protein translation, and exons" ; rdfs:comment "Additionally the transcript might have one or more annotations" . affx:unigene a owl:ObjectProperty ; owl:domain affx:Transcript ; owl:range rdfs:Literal ; owl:cardinality "1" ; rdfs:comment "The Unigene ID of the transcript - and splice variant" . affx:translatesTo a owl:ObjectProperty ; owl:domain affx:Transcript ; owl:range rdfs:Literal ; owl:cardinality "1" ; rdfs:comment "The amino acid sequence derived from the transcript" . affx:fullCds a owl:ObjectProperty ; owl:domain affx:Transcript ; owl:range affx:GenomicCoordinates ; owl:cardinality "1" ; rdfs:comment "Start and stop coordinates of the full CDS region" . affx:hasExon a owl:ObjectProperty ; owl:domain affx:Transcript ; owl:range affx:ExonPlusCds ; owl:minCardinality "1" ; rdfs:comment "Here, exons are defined only by their coordinates " . affx:ExonPlusCds a owl:Class ; owl:hasProperty affx:relatesToExon ; owl:hasProperty affx:cdsType ; owl:hasProperty affx:cdsStart ; owl:hasProperty affx:cdsStop ; owl:hasProperty affx:frame . affx:relatesToExon a owl:ObjectProperty ; owl:domain affx:ExonWithCds ; owl:range affx:Exon ; owl:cardinality "1" ; rdfs:comment "For associating exons with properties such as frame" . affx:Exon a owl:Class ; rdfs:subClassOf affx:GenomicSpan ; owl:hasProperty affx:commonToAll ; rdfs:comment "Defines the coordinates of an exon on the genome" . affx:GenomicSpan a owl:Class ; rdfs:subClassOf affx:GenomicCoordinates ; rdfs:comment "This defines a region of _ungapped_ genomic alignment" . affx:GenomicCoordinates a owl:Class ; rdfs:subClassOf affx:Coordinates ; rdfs:comment "Start and stop, possibly with intervening gaps " ; rdfs:comment "Strand and chr will be specified at the gene level " . affx:Coordinates a owl:Class ; owl:hasProperty affx:startsAt ; owl:hasProperty affx:stopsAt . affx:startsAt a owl:ObjectProperty ; owl:cardinality "1" ; owl:range rdfs:Literal . affx:stopsAt a owl:ObjectProperty ; owl:cardinality "1" ; owl:range rdfs:Literal . affx:cdsType a owl:ObjectProperty ; owl:domain affx:ExonPlusCds ; owl:range rdfs:Literal ; rdfs:comment "Expected CDS types are Full, Partial, and None" . affx:commonToAll a owl:ObjectProperty ; owl:range rdfs:Literal ; owl:cardinality "1" ; rdfs:comment "Shows if all the gene's variants share this object" . affx:CdsOccupancy a owl:Class ; rdfs:subClassOf rdfs:Literal . affx:cdsStart a owl:ObjectProperty ; rdfs:subClassOf affx:startsAt ; rdfs:comment "For indicating where a specific CDS region starts" . affx:cdsStop a owl:ObjectProperty ; rdfs:subClassOf affx:stopsAt ; rdfs:comment "For indicating where a specific CDS region stops" . affx:frame a owl:ObjectProperty ; owl:range rdfs:Literal ; owl:cardinality "1" . affx:signalPHit a owl:ObjectProperty ; rdfs:domain affx:Transcript ; rdfs:range affx:SignalPeptide ; owl:cardinality "1" . affx:SignalPeptide a owl:Class ; rdfs:subClassOf affx:Annotation ; rdfs:comment "Represents a SIGNALP hit" . affx:tmHMMHit a owl:ObjectProperty ; rdfs:domain affx:Transcript ; rdfs:range affx:Transmembrane ; owl:cardinality "1" . affx:Transmembrane a owl:Class ; rdfs:subClassOf affx:Annotation ; owl:hasProperty affx:helixCount ; rdfs:comment "Represents a TMHMM hit" . affx:Annotation a owl:Class ; owl:hasProperty affx:containsMotif; owl:hasProperty affx:commonToAll ; owl:hasProperty affx:motifCount . affx:containsMotif a owl:ObjectProperty ; owl:domain affx:Annotation ; owl:range affx:Motif ; owl:minCardinality "1" . affx:motifCount a owl:ObjectProperty ; owl:domain affx:Annotation ; owl:range rdfs:Literal ; owl:cardinality "1" ; rdfs:comment "Number of motifs (eg. TM passes) in this annotation" . affx:Motif a owl:Class ; owl:hasProperty affx:hasProteinSpan . affx:hasProteinSpan a owl:ObjectProperty ; owl:domain affx:Motif ; owl:range affx:ProteinSpan . affx:ProteinCoordinates a owl:Class ; rdfs:subClassOf affx:Coordinates ; rdfs:comment "Coordinates onto the protein sequence, possibly gapped ". affx:spannedBy a owl:ObjectProperty ; owl:domain affx:ProteinSpan ; owl:range affx:CdsSpan ; owl:minCardinality "1" . affx:ProteinSpan a owl:Class ; rdfs:subClassOf affx:ProteinCoordinates ; owl:hasProperty affx:spannedBy ; rdfs:comment "An ungapped region of the protein sequence " ; rdfs:comment "Each ProteinSpan as one or more corresponding CDS span" . affx:CdsSpan a owl:Class ; rdfs:subClassOf affx:GenomicSpan ; owl:hasProperty affx:inFrame ; rdfs:comment "A CDS span is a genomic span with a translation frame" ; rdfs:comment "Each CDS span describes a part of the full CDS region" . :Gene3915 a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi13879500] . :gi13879500 a affx:Transcript ; affx:unigene "iMm.30239" ; affx:translatesTo "MAPGRAVAGLLLLAATSLGHPSEGPELAFSEDVLSVFGANRSLSAAQLGRLLERLGAASQQGALDLGQLHFNQCLSAEDIFSLHGFSNVTQITSSNFSAICPAILQQLNFHPCEDLRKHNAKPSLSEVWGYGFLSVTIINLASLLGLILTPLIKKSYFPKILTYFVGLAIGTLFSNAIFQLIPEAFGFNPKIDNYVEKAVAVFGGFYMLFFVERTLKMLLKTYGQNDHTHFRNDDFGSKEKTHQPKTLPLPAVNGVTCYANPAVTEPNGHIHFDTVSVVSLQDGKTEPSSCTCLKGPKLSEIGTIAWMITLCDALHNFIDGLAIGASCTLSLLQGLSTSIAILCEEFPHELGDFVILLNAGMSTRQALLFNFLSACSCYVGLAFGILVGNNFAPNIIFALAGGMFLYISLADMFPEMNDMLREKVTGRQTDFTFFMIQNAGMLTGFTAILLITLYAGDIELQ" ; affx:hasCds [affx:startsAt "136311280" ; affx:stopsAt "136371464" ]; affx:hasExon [ affx:relatesToExon :Gene3915_e1; affx:cdsType "Partial" ; affx:cdsStart "136311280" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3915_e2; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3915_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3915_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3915_e5; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3915_e6; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3915_e7; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3915_e8; affx:cdsType "Partial" ; affx:cdsStop "136371464" ; affx:frame "1"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "0" ; affx:stopsAt "19" ; affx:spannedBy [ affx:startsAt "136311280" ; affx:stopsAt "136311337" ; affx:inFrame "0" ] ; ] ; ] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "5" ; affx:containsMotif [ affx:startsAt "128" ; affx:stopsAt "150" ; affx:spannedBy [ affx:startsAt "136340670" ; affx:stopsAt "136340736" ; affx:inFrame "1" ] ; ] ; affx:containsMotif [ affx:startsAt "199" ; affx:stopsAt "216" ; affx:spannedBy [ affx:startsAt "136342292" ; affx:stopsAt "136342343" ; affx:inFrame "0" ] ; ] ; affx:containsMotif [ affx:startsAt "368" ; affx:stopsAt "387" ; affx:spannedBy [ affx:startsAt "136369161" ; affx:stopsAt "136369218" ; affx:inFrame "2" ] ; ] ; affx:containsMotif [ affx:startsAt "392" ; affx:stopsAt "411" ; affx:spannedBy [ affx:startsAt "136369233" ; affx:stopsAt "136369290" ; affx:inFrame "2" ] ; ] ; affx:containsMotif [ affx:startsAt "432" ; affx:stopsAt "454" ; affx:spannedBy [ affx:startsAt "136371371" ; affx:stopsAt "136371437" ; affx:inFrame "1" ] ; ] ; ] ; . :Gene3915_e1 a affx:Exon ; affx:startsAt "136311093" ; affx:stopsAt "136311499" ; affx:commonToAll "1" . :Gene3915_e2 a affx:Exon ; affx:startsAt "136333781" ; affx:stopsAt "136333944" ; affx:commonToAll "1" . :Gene3915_e3 a affx:Exon ; affx:startsAt "136340668" ; affx:stopsAt "136340838" ; affx:commonToAll "1" . :Gene3915_e4 a affx:Exon ; affx:startsAt "136342247" ; affx:stopsAt "136342370" ; affx:commonToAll "1" . :Gene3915_e5 a affx:Exon ; affx:startsAt "136342835" ; affx:stopsAt "136343006" ; affx:commonToAll "1" . :Gene3915_e6 a affx:Exon ; affx:startsAt "136368706" ; affx:stopsAt "136368914" ; affx:commonToAll "1" . :Gene3915_e7 a affx:Exon ; affx:startsAt "136369111" ; affx:stopsAt "136369296" ; affx:commonToAll "1" . :Gene3915_e8 a affx:Exon ; affx:startsAt "136371314" ; affx:stopsAt "136372902" ; affx:commonToAll "1" . :2010002L15Rik a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi13385823] . :gi13385823 a affx:Transcript ; affx:unigene "iMm.46306" ; affx:translatesTo "MASKGVRLLLLLSWVAGPEVLSDILRPSCAPGWFYYRSHCYGYFRKLRNWSHAELECQSYGNGSHLASVLNQKEASVISKYITGYQRNLPVWIGLHDPQKKQLWQWTDGSTNLYRRWNPRTKSEARHCAEMNPKDKFLTWNKNGCANRQHFLCKYKT" ; affx:hasCds [affx:startsAt "98553573" ; affx:stopsAt "98565165" ]; affx:hasExon [ affx:relatesToExon :2010002L15Rik_e1; affx:cdsType "Partial" ; affx:cdsStart "98553573" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2010002L15Rik_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2010002L15Rik_e3; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2010002L15Rik_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2010002L15Rik_e5; affx:cdsType "Partial" ; affx:cdsStop "98565165" ; affx:frame "0"] ; . :2010002L15Rik_e1 a affx:Exon ; affx:startsAt "98553453" ; affx:stopsAt "98553640" ; affx:commonToAll "1" . :2010002L15Rik_e2 a affx:Exon ; affx:startsAt "98558583" ; affx:stopsAt "98558678" ; affx:commonToAll "1" . :2010002L15Rik_e3 a affx:Exon ; affx:startsAt "98559947" ; affx:stopsAt "98560085" ; affx:commonToAll "1" . :2010002L15Rik_e4 a affx:Exon ; affx:startsAt "98561804" ; affx:stopsAt "98561910" ; affx:commonToAll "1" . :2010002L15Rik_e5 a affx:Exon ; affx:startsAt "98565097" ; affx:stopsAt "98565548" ; affx:commonToAll "1" . :2610036A20Rik a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi12963704] ; affx:hasVariant [affx:representedBy :gi7677530] ; affx:hasVariant [affx:representedBy :gi7677536] ; affx:hasVariant [affx:representedBy :gi7677539] . :gi12963704 a affx:Transcript ; affx:unigene "iMm.46503" ; affx:translatesTo "MASAVVDSGGSALELPSDGGENQEGGDTGPDCPAVIVEPVPSARLEQGYAAQVLVYDDETYMMQDVAEEQEVETENSETVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPVEVFVPPCISTPEFIHAAMRPDVITETVVEVSTEESEPMDASPIPTSPDSHEPMKKKKVGRKPKTQQSPVSNGSPELGIKKKAREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCPEDLAAAADDKSLERVSLSAESLLKAATAVRGGKNSSPLNCSRAEKGVARVVNITSPTHDGSSRSPTTTAPVSAAAAPRTVRVAMQVPVVMTSLGQKISAVAVQSVNAGTGSPLITSTSPASASSPKVVIQTVPTVMPASTENGDRITMQPAKIITIPATQLAQCQLQAKSNLTGSGSINIVGTPLAVRALTPVSIAHGTPVMRLSVPAQQASGQTPPRVISALLKGPEGKSEAKKQEHDVKTLQLVEEKGADGNKTVTHVVVVSAPSAIALPVTMKTEGLVTCEK" ; affx:hasCds [affx:startsAt "51690928" ; affx:stopsAt "51757146" ]; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e1; affx:cdsType "Partial" ; affx:cdsStart "51690928" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e4; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e6; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e7; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e9; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e10; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e11; affx:cdsType "Partial" ; affx:cdsStop "51757146" ; affx:frame "2"] ; . :gi7677530 a affx:Transcript ; affx:unigene "iMm.46503" ; affx:translatesTo "MASAVVDSGGSALELPSDGGENQEGGDTGPDCPAVIVEPVPSARLEQGYAAQVLVYDDETYMMQDVAEEQEVETENSETVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPEFIHAAMRPDVITETVVEVSTEESEPMDASPIPTSPDSHEPMKKKKVGRKPKTQQSPVSNGSPELGIKKKAREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCPEDLAAAADDKSLERVSLSAESLLKAATAVRGGKNSSPLNCSRAEKGVARVVNITSPTHDGSSRSPTTTAPVSAAAAPRTVRVAMQVPVVMTSLGQKISAVAVQSVNAGTGSPLITSTSPASASSPKVVIQTVPTVMPASTENGDRITMQPAKIITIPATQLAQCQLQAKSNLTGSGSINIVGTPLAVRALTPVSIAHGTPVMRLSVPAQQASGQTPPRVISALLKGPEGKSEAKKQEHDVKTLQLVEEKGADGNKTVTHVVVVSAPSAIALPVTMKTEGLVTCEK" ; affx:hasCds [affx:startsAt "51690928" ; affx:stopsAt "51757146" ]; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e1; affx:cdsType "Partial" ; affx:cdsStart "51690928" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e4; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e5; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e7; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e9; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e10; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e11; affx:cdsType "Partial" ; affx:cdsStop "51757146" ; affx:frame "2"] ; . :gi7677536 a affx:Transcript ; affx:unigene "iMm.46503" ; affx:translatesTo "MATSLHEGPTNQLDLLIRAVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPEFIHAAMRPDVITETVVEVSTEESEPMDASPIPTSPDSHEPMKKKKVGRKPKTQQSPVSNGSPELGIKKKAREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCPEDLAAAADDKSLERVSLSAESLLKAATAVRGGKNSSPLNCSRAEKGVARVVNITSPTHDGSSRSPTTTAPVSAAAAPRTVRVAMQVPVVMTSLGQKISAVAVQSVNAGTGSPLITSTSPASASSPKVVIQTVPTVMPASTENGDRITMQPAKIITIPATQLAQCQLQAKSNLTGSGSINIVGTPLAVRALTPVSIAHGTPVMRLSVPAQQASGQTPPRVISALLKGPEGKSEAKKQEHDVKTLQLVEEKGADGNKTVTHVVVVSAPSAIALPVTMKTEGLVTCEK" ; affx:hasCds [affx:startsAt "51690928" ; affx:stopsAt "51711288" ]; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e1; affx:cdsType "Partial" ; affx:cdsStart "51690928" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e2; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e3; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e5; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e7; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e8; affx:cdsType "Partial" ; affx:cdsStop "51711288" ; affx:frame "0"] ; . :gi7677539 a affx:Transcript ; affx:unigene "iMm.46503" ; affx:translatesTo "MATSLHEGPTNQLDLLIRAVEASVHSSNAHCTDKTIEAAEALLHMESPTCLRDSRSPVEVFVPPCISTPEFIHAAMRPDVITETVVEVSTEESEPMDASPIPTSPDSHEPMKKKKVGRKPKTQQSPVSNGSPELGIKKKAREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCPEDLAAAADDKSLERVSLSAESLLKAATAVRGGKNSSPLNCSRAEKGVARVVNITSPTHDGSSRSPTTTAPVSAAAAPRTVRVAMQVPVVMTSLGQKISAVAVQSVNAGTGSPLITSTSPASASSPKVVIQTVPTVMPASTENGDRITMQPAKIITIPATQLAQCQLQAKSNLTGSGSINIVGTPLAVRALTPVSIAHGTPVMRLSVPAQQASGQTPPRVISALLKGPEGKSEAKKQEHDVKTLQLVEEKGADGNKTVTHVVVVSAPSAIALPVTMKTEGLVTCEK" ; affx:hasCds [affx:startsAt "51690928" ; affx:stopsAt "51711288" ]; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e1; affx:cdsType "Partial" ; affx:cdsStart "51690928" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e2; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e3; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e6; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e7; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2610036A20Rik_e8; affx:cdsType "Partial" ; affx:cdsStop "51711288" ; affx:frame "0"] ; . :2610036A20Rik_e1 a affx:Exon ; affx:startsAt "51690232" ; affx:stopsAt "51691553" ; affx:commonToAll "1" . :2610036A20Rik_e2 a affx:Exon ; affx:startsAt "51691992" ; affx:stopsAt "51692343" ; affx:commonToAll "1" . :2610036A20Rik_e3 a affx:Exon ; affx:startsAt "51693739" ; affx:stopsAt "51693932" ; affx:commonToAll "1" . :2610036A20Rik_e4 a affx:Exon ; affx:startsAt "51695566" ; affx:stopsAt "51695653" ; affx:commonToAll "1" . :2610036A20Rik_e5 a affx:Exon ; affx:startsAt "51699436" ; affx:stopsAt "51699574" ; affx:commonToAll "0" . :2610036A20Rik_e6 a affx:Exon ; affx:startsAt "51699436" ; affx:stopsAt "51699610" ; affx:commonToAll "0" . :2610036A20Rik_e7 a affx:Exon ; affx:startsAt "51701320" ; affx:stopsAt "51701434" ; affx:commonToAll "1" . :2610036A20Rik_e8 a affx:Exon ; affx:startsAt "51711230" ; affx:stopsAt "51711420" ; affx:commonToAll "0" . :2610036A20Rik_e9 a affx:Exon ; affx:startsAt "51742212" ; affx:stopsAt "51742227" ; affx:commonToAll "0" . :2610036A20Rik_e10 a affx:Exon ; affx:startsAt "51742903" ; affx:stopsAt "51743054" ; affx:commonToAll "0" . :2610036A20Rik_e11 a affx:Exon ; affx:startsAt "51757074" ; affx:stopsAt "51757304" ; affx:commonToAll "0" . :1810055D05Rik a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi13385831] . :gi13385831 a affx:Transcript ; affx:unigene "iMm.26644" ; affx:translatesTo "MASTVVAVGLTIAAAGFAGRYVLQAMKHVEPQVKQVFQSLPKSAFGGGYYRGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK" ; affx:hasCds [affx:startsAt "33945372" ; affx:stopsAt "33949107" ]; affx:hasExon [ affx:relatesToExon :1810055D05Rik_e1; affx:cdsType "Partial" ; affx:cdsStart "33945372" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :1810055D05Rik_e2; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :1810055D05Rik_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :1810055D05Rik_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :1810055D05Rik_e5; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :1810055D05Rik_e6; affx:cdsType "Partial" ; affx:cdsStop "33949107" ; affx:frame "2"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "0" ; affx:stopsAt "18" ; affx:spannedBy [ affx:startsAt "33949104" ; affx:stopsAt "33949107" ; affx:inFrame "2" ] ; affx:spannedBy [ affx:startsAt "33948150" ; affx:stopsAt "33948201" ; affx:inFrame "2" ] ; ] ; ] ; . :1810055D05Rik_e1 a affx:Exon ; affx:startsAt "33945203" ; affx:stopsAt "33945443" ; affx:commonToAll "1" . :1810055D05Rik_e2 a affx:Exon ; affx:startsAt "33946693" ; affx:stopsAt "33946764" ; affx:commonToAll "1" . :1810055D05Rik_e3 a affx:Exon ; affx:startsAt "33947123" ; affx:stopsAt "33947203" ; affx:commonToAll "1" . :1810055D05Rik_e4 a affx:Exon ; affx:startsAt "33948002" ; affx:stopsAt "33948076" ; affx:commonToAll "1" . :1810055D05Rik_e5 a affx:Exon ; affx:startsAt "33948149" ; affx:stopsAt "33948201" ; affx:commonToAll "1" . :1810055D05Rik_e6 a affx:Exon ; affx:startsAt "33949104" ; affx:stopsAt "33949240" ; affx:commonToAll "1" . :Gene3919 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi18204090] . :gi18204090 a affx:Transcript ; affx:unigene "iMm.154589" ; affx:translatesTo "MAAAALLAAVDRNQLRRVPILLLQPREWAWKLRTMKYGTTPGGSITKVLIANRGEIACRVIRTAKKMGVQSVAVYSEADRNSMHVDMADEAYSIGPAPSQQSYLAMEKIIQVAKSSAAQAIHPGYGFLSENMEFAELCKQEGIIFIGPPSSAIRDMGIKSTSKSIMAAAGVPVVEGYHGKDQSDQCLREHAGKIGYPVMIKAVRGGGGKGMRIVRSEREFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYLFERDCSVQRRHQKIIEEAPAPGINPEVRRKLGEAAVRAAKAVKYVGAGTVEFIMDSRHNFYFMEMNTRLQVEHPVTEMITGTDLVEWQLRIAAGEKIPLSQEEIPLQGHAFEARIYAEDPDNNFMPGAGPLVHLSTPSADMSTRIETGVRQGDEVSVHYDPMIAKLVVWASDRQSALSKLRYCLHQYNIVGLRSNVDFLLRLSGHPEFEAGNVHTDFIPQHHKDLLPSHSTIAKESVCQAALGLILKEKEMTSAFKLHTQDQFSPFSFSSGRRLNISYTRNMTLRSGKSDIVIAVTYNRDGSYDMQIDNKSFRVLGDLSSEDGCTYLKSSINGVARKSKFILLDNTVHLFSMEGSIEVGIPVPKYLSPVSAEGAQGGTIAPMTGTIEKVFVKAGDRVKAGDSLMVMIAMKMEHTIKAPKDGRIKKVFFSEGAQANRHAPLVEFEEEESDK" ; affx:hasCds [affx:startsAt "35827530" ; affx:stopsAt "35868076" ]; affx:hasExon [ affx:relatesToExon :Gene3919_e1; affx:cdsType "Partial" ; affx:cdsStart "35827530" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e4; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e5; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e6; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e7; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e8; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e9; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e10; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e11; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e12; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e13; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e14; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e15; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e16; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e17; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e18; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3919_e19; affx:cdsType "Partial" ; affx:cdsStop "35868076" ; affx:frame "1"] ; . :Gene3919_e1 a affx:Exon ; affx:startsAt "35827353" ; affx:stopsAt "35827647" ; affx:commonToAll "1" . :Gene3919_e2 a affx:Exon ; affx:startsAt "35828450" ; affx:stopsAt "35828522" ; affx:commonToAll "1" . :Gene3919_e3 a affx:Exon ; affx:startsAt "35831102" ; affx:stopsAt "35831210" ; affx:commonToAll "1" . :Gene3919_e4 a affx:Exon ; affx:startsAt "35831844" ; affx:stopsAt "35831982" ; affx:commonToAll "1" . :Gene3919_e5 a affx:Exon ; affx:startsAt "35835941" ; affx:stopsAt "35835991" ; affx:commonToAll "1" . :Gene3919_e6 a affx:Exon ; affx:startsAt "35839995" ; affx:stopsAt "35840082" ; affx:commonToAll "1" . :Gene3919_e7 a affx:Exon ; affx:startsAt "35841591" ; affx:stopsAt "35841808" ; affx:commonToAll "1" . :Gene3919_e8 a affx:Exon ; affx:startsAt "35843312" ; affx:stopsAt "35843422" ; affx:commonToAll "1" . :Gene3919_e9 a affx:Exon ; affx:startsAt "35844178" ; affx:stopsAt "35844362" ; affx:commonToAll "1" . :Gene3919_e10 a affx:Exon ; affx:startsAt "35846440" ; affx:stopsAt "35846568" ; affx:commonToAll "1" . :Gene3919_e11 a affx:Exon ; affx:startsAt "35851250" ; affx:stopsAt "35851332" ; affx:commonToAll "1" . :Gene3919_e12 a affx:Exon ; affx:startsAt "35852499" ; affx:stopsAt "35852611" ; affx:commonToAll "1" . :Gene3919_e13 a affx:Exon ; affx:startsAt "35857361" ; affx:stopsAt "35857483" ; affx:commonToAll "1" . :Gene3919_e14 a affx:Exon ; affx:startsAt "35857566" ; affx:stopsAt "35857714" ; affx:commonToAll "1" . :Gene3919_e15 a affx:Exon ; affx:startsAt "35858214" ; affx:stopsAt "35858336" ; affx:commonToAll "1" . :Gene3919_e16 a affx:Exon ; affx:startsAt "35861434" ; affx:stopsAt "35861530" ; affx:commonToAll "1" . :Gene3919_e17 a affx:Exon ; affx:startsAt "35863299" ; affx:stopsAt "35863436" ; affx:commonToAll "1" . :Gene3919_e18 a affx:Exon ; affx:startsAt "35865043" ; affx:stopsAt "35865090" ; affx:commonToAll "1" . :Gene3919_e19 a affx:Exon ; affx:startsAt "35867999" ; affx:stopsAt "35868150" ; affx:commonToAll "1" . :Gene3920 a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi15929272] ; affx:hasVariant [affx:representedBy :gi2645851] . :gi15929272 a affx:Transcript ; affx:unigene "iMm.18268" ; affx:translatesTo "MPHPRRYHSSERGSRGSYHEHYQSRKHKRRRSRSWSSSSDRTRRRRREDSYHVRSRSYDDHSSDRRLYDRRYCGSYRRNDYSRDRGEAYYDTDFRQSYEYHRENSSYRSQRSSRRKHRRRRRRSRTFSRSSSHSSRRAKSVEDDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGTQVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNLEKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYVGFTLFQTHDNREHLAMMERILGPVPSRMIRKTRKQKYFYRGRLDWDENTSAGRYVRENCKPLRRYLTSEAEDHHQLFDLIENMLEYEPAKRLTLGEALQHPFFACLRTEPPNTKLWDSSRDISR" ; affx:hasCds [affx:startsAt "89999185" ; affx:stopsAt "90009214" ]; affx:hasExon [ affx:relatesToExon :Gene3920_e1; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :Gene3920_e3; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e5; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e6; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e7; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e8; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e9; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e10; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e11; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e12; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e13; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e14; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e16; affx:cdsType "Partial" ; affx:cdsStop "90009214" ; affx:frame "2"] ; . :gi2645851 a affx:Transcript ; affx:unigene "iMm.18268" ; affx:translatesTo "MPHPRRYHSSERGSRGSYHEHYQSRKHKRRRSRSWSSSSDRTRRRRREDSYHVRSRSSYDDHSSDRRLYDRRYCGSYRRNDYSRDRGEAYYDTDFRQSYEYHRENSSYRSQRSSRRKHRRRRRRSRTFSRSSSHSSRRAKSVEDDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGTQVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNLEKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYVGFTLFQTHDNREHLAMMERILGPVPSRMIRKTRKQKYFYRGRLDWDENTSAGRYVRENCKPLRRYLTSEAEDHHQLFDLIENMLEYEPAKRLTLGEALQHPFFACLRTEPPNTKLWDSSRDISR" ; affx:hasCds [affx:startsAt "89999185" ; affx:stopsAt "90009214" ]; affx:hasExon [ affx:relatesToExon :Gene3920_e2; affx:cdsType "Partial" ; affx:cdsStart "89999185" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e4; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e6; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e7; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e8; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e9; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e10; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e11; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e12; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e13; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e14; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3920_e15; affx:cdsType "Partial" ; affx:cdsStop "90009214" ; affx:frame "2"] ; . :Gene3920_e1 a affx:Exon ; affx:startsAt "89997045" ; affx:stopsAt "89997326" ; affx:commonToAll "0" . :Gene3920_e2 a affx:Exon ; affx:startsAt "89999184" ; affx:stopsAt "89999355" ; affx:commonToAll "0" . :Gene3920_e3 a affx:Exon ; affx:startsAt "89999185" ; affx:stopsAt "89999355" ; affx:commonToAll "0" . :Gene3920_e4 a affx:Exon ; affx:startsAt "90000845" ; affx:stopsAt "90001074" ; affx:commonToAll "0" . :Gene3920_e5 a affx:Exon ; affx:startsAt "90000848" ; affx:stopsAt "90001074" ; affx:commonToAll "0" . :Gene3920_e6 a affx:Exon ; affx:startsAt "90001770" ; affx:stopsAt "90001855" ; affx:commonToAll "1" . :Gene3920_e7 a affx:Exon ; affx:startsAt "90002201" ; affx:stopsAt "90002268" ; affx:commonToAll "1" . :Gene3920_e8 a affx:Exon ; affx:startsAt "90002445" ; affx:stopsAt "90002562" ; affx:commonToAll "1" . :Gene3920_e9 a affx:Exon ; affx:startsAt "90005714" ; affx:stopsAt "90005881" ; affx:commonToAll "1" . :Gene3920_e10 a affx:Exon ; affx:startsAt "90006534" ; affx:stopsAt "90006629" ; affx:commonToAll "1" . :Gene3920_e11 a affx:Exon ; affx:startsAt "90007579" ; affx:stopsAt "90007709" ; affx:commonToAll "1" . :Gene3920_e12 a affx:Exon ; affx:startsAt "90007792" ; affx:stopsAt "90007875" ; affx:commonToAll "1" . :Gene3920_e13 a affx:Exon ; affx:startsAt "90008026" ; affx:stopsAt "90008106" ; affx:commonToAll "1" . :Gene3920_e14 a affx:Exon ; affx:startsAt "90008279" ; affx:stopsAt "90008370" ; affx:commonToAll "1" . :Gene3920_e15 a affx:Exon ; affx:startsAt "90009028" ; affx:stopsAt "90009224" ; affx:commonToAll "0" . :Gene3920_e16 a affx:Exon ; affx:startsAt "90009028" ; affx:stopsAt "90009556" ; affx:commonToAll "0" . :Gene3921 a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi633766] . :gi633766 a affx:Transcript ; affx:unigene "iMm.4425" ; affx:translatesTo "MVATCLQVVGFVTSFVGWIGIIVTTSTNDWVVTCSYTIPTCRKMDELGSKGLWADCVMATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGHEPGVAKYRRAQLAGVLLILLALCAIVATIWFPVCAHREITIVSFGYSLYAGWIGAVMCLVGGCVIVCCSGDAQSFGENRFYYSSGSSSPTHAKSAHV" ; affx:hasCds [affx:startsAt "30967452" ; affx:stopsAt "30980800" ]; affx:hasExon [ affx:relatesToExon :Gene3921_e1; affx:cdsType "Partial" ; affx:cdsStart "30967452" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3921_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3921_e3; affx:cdsType "Partial" ; affx:cdsStop "30980800" ; affx:frame "1"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "0" ; affx:stopsAt "27" ; affx:spannedBy [ affx:startsAt "30967452" ; affx:stopsAt "30967533" ; affx:inFrame "0" ] ; ] ; ] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "3" ; affx:containsMotif [ affx:startsAt "84" ; affx:stopsAt "106" ; affx:spannedBy [ affx:startsAt "30971242" ; affx:stopsAt "30971308" ; affx:inFrame "0" ] ; ] ; affx:containsMotif [ affx:startsAt "122" ; affx:stopsAt "143" ; affx:spannedBy [ affx:startsAt "30971356" ; affx:stopsAt "30971381" ; affx:inFrame "0" ] ; affx:spannedBy [ affx:startsAt "30980567" ; affx:stopsAt "30980605" ; affx:inFrame "1" ] ; ] ; affx:containsMotif [ affx:startsAt "158" ; affx:stopsAt "180" ; affx:spannedBy [ affx:startsAt "30980650" ; affx:stopsAt "30980716" ; affx:inFrame "1" ] ; ] ; ] ; . :Gene3921_e1 a affx:Exon ; affx:startsAt "30967293" ; affx:stopsAt "30967678" ; affx:commonToAll "1" . :Gene3921_e2 a affx:Exon ; affx:startsAt "30971216" ; affx:stopsAt "30971381" ; affx:commonToAll "1" . :Gene3921_e3 a affx:Exon ; affx:startsAt "30980567" ; affx:stopsAt "30981810" ; affx:commonToAll "1" . :Ccna2 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi6753307] . :gi6753307 a affx:Transcript ; affx:unigene "iMm.4189" ; affx:translatesTo "MPGTSRHSGRDAGSALLSLHQEDQENVNPEKLAPAQQPRAQAVLKAGNVRGPAPQQKLKTRRVAPLKDLPINDEHVTAGPSWKAVSKQPAFTIHVDEAEETQKRPAELKETECEDALAFNAAVSLPGARKPLTPLDYPMDGSFESPHAMDMSIVLEDKPVNVNEVPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSLIAGAAFHLALYTVTGQSWPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIREKYKHSKYHSVSLLNPPETLSV" ; affx:hasCds [affx:startsAt "36446469" ; affx:stopsAt "36452059" ]; affx:hasExon [ affx:relatesToExon :Ccna2_e1; affx:cdsType "Partial" ; affx:cdsStart "36446469" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Ccna2_e2; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Ccna2_e3; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Ccna2_e4; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Ccna2_e5; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Ccna2_e6; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Ccna2_e7; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Ccna2_e8; affx:cdsType "Partial" ; affx:cdsStop "36452059" ; affx:frame "2"] ; . :Ccna2_e1 a affx:Exon ; affx:startsAt "36445100" ; affx:stopsAt "36446518" ; affx:commonToAll "1" . :Ccna2_e2 a affx:Exon ; affx:startsAt "36446776" ; affx:stopsAt "36446910" ; affx:commonToAll "1" . :Ccna2_e3 a affx:Exon ; affx:startsAt "36447235" ; affx:stopsAt "36447349" ; affx:commonToAll "1" . :Ccna2_e4 a affx:Exon ; affx:startsAt "36447959" ; affx:stopsAt "36448167" ; affx:commonToAll "1" . :Ccna2_e5 a affx:Exon ; affx:startsAt "36448823" ; affx:stopsAt "36449047" ; affx:commonToAll "1" . :Ccna2_e6 a affx:Exon ; affx:startsAt "36449215" ; affx:stopsAt "36449325" ; affx:commonToAll "1" . :Ccna2_e7 a affx:Exon ; affx:startsAt "36450971" ; affx:stopsAt "36451215" ; affx:commonToAll "1" . :Ccna2_e8 a affx:Exon ; affx:startsAt "36451873" ; affx:stopsAt "36452170" ; affx:commonToAll "1" . :Chrnb2 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi10803054] . :gi10803054 a affx:Transcript ; affx:unigene "iMm.88858" ; affx:translatesTo "MARCSNSMALLFSFGLLWLCSGVLGTDTEERLVEHLLDPSRYNKLIRPATNGSELVTVQLMVSLAQLISVHEREQIMTTNVWLTQEWEDYRLTWKPEDFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFYSNAVVSYDGSIFWLPPAIYKSACKIEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSDVASLDDFTPSGEWDIIALPGRRNENPDDSTYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTHTMAPWVKVVFLEKLPTLLFLQQPRHRCARQRLRLRRRQREREGAGTLFFREGPAADPCTCFVNPASMQGLAGAFQAEPAAAGLGRSMGPCSCGLREAVDGVRFIADHMRSEDDDQSVREDWKYVAMVIDRLFLWIFVFVCVFGTIGMFLQPLFQNYTATTFLHSDHSAPSSK" ; affx:hasCds [affx:startsAt "90597074" ; affx:stopsAt "90604381" ]; affx:hasExon [ affx:relatesToExon :Chrnb2_e1; affx:cdsType "Partial" ; affx:cdsStart "90597074" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Chrnb2_e2; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Chrnb2_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Chrnb2_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Chrnb2_e5; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Chrnb2_e6; affx:cdsType "Partial" ; affx:cdsStop "90604381" ; affx:frame "0"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "0" ; affx:stopsAt "25" ; affx:spannedBy [ affx:startsAt "90604317" ; affx:stopsAt "90604381" ; affx:inFrame "0" ] ; affx:spannedBy [ affx:startsAt "90603329" ; affx:stopsAt "90603340" ; affx:inFrame "1" ] ; ] ; ] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "4" ; affx:containsMotif [ affx:startsAt "234" ; affx:stopsAt "256" ; affx:spannedBy [ affx:startsAt "90601213" ; affx:stopsAt "90601279" ; affx:inFrame "1" ] ; ] ; affx:containsMotif [ affx:startsAt "268" ; affx:stopsAt "290" ; affx:spannedBy [ affx:startsAt "90601111" ; affx:stopsAt "90601177" ; affx:inFrame "1" ] ; ] ; affx:containsMotif [ affx:startsAt "300" ; affx:stopsAt "322" ; affx:spannedBy [ affx:startsAt "90601015" ; affx:stopsAt "90601081" ; affx:inFrame "1" ] ; ] ; affx:containsMotif [ affx:startsAt "460" ; affx:stopsAt "482" ; affx:spannedBy [ affx:startsAt "90597134" ; affx:stopsAt "90597200" ; affx:inFrame "0" ] ; ] ; ] ; . :Chrnb2_e1 a affx:Exon ; affx:startsAt "90597052" ; affx:stopsAt "90597245" ; affx:commonToAll "1" . :Chrnb2_e2 a affx:Exon ; affx:startsAt "90600646" ; affx:stopsAt "90601616" ; affx:commonToAll "1" . :Chrnb2_e3 a affx:Exon ; affx:startsAt "90602373" ; affx:stopsAt "90602483" ; affx:commonToAll "1" . :Chrnb2_e4 a affx:Exon ; affx:startsAt "90602984" ; affx:stopsAt "90603029" ; affx:commonToAll "1" . :Chrnb2_e5 a affx:Exon ; affx:startsAt "90603194" ; affx:stopsAt "90603340" ; affx:commonToAll "1" . :Chrnb2_e6 a affx:Exon ; affx:startsAt "90604317" ; affx:stopsAt "90604401" ; affx:commonToAll "1" . :Cct3 a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi6753319] . :gi6753319 a affx:Transcript ; affx:unigene "iMm.3576" ; affx:translatesTo "MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMISTLKKISTPVDVNNREMMLSIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQTGAPDAGQE" ; affx:hasCds [affx:startsAt "89084841" ; affx:stopsAt "89109314" ]; affx:hasExon [ affx:relatesToExon :Cct3_e1; affx:cdsType "Partial" ; affx:cdsStart "89084841" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Cct3_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Cct3_e3; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Cct3_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Cct3_e5; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Cct3_e6; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Cct3_e7; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Cct3_e8; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Cct3_e9; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Cct3_e10; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Cct3_e11; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Cct3_e12; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Cct3_e13; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Cct3_e14; affx:cdsType "Partial" ; affx:cdsStop "89109314" ; affx:frame "1"] ; . :Cct3_e1 a affx:Exon ; affx:startsAt "89084740" ; affx:stopsAt "89084872" ; affx:commonToAll "1" . :Cct3_e2 a affx:Exon ; affx:startsAt "89086947" ; affx:stopsAt "89087009" ; affx:commonToAll "1" . :Cct3_e3 a affx:Exon ; affx:startsAt "89088405" ; affx:stopsAt "89088456" ; affx:commonToAll "1" . :Cct3_e4 a affx:Exon ; affx:startsAt "89088534" ; affx:stopsAt "89088597" ; affx:commonToAll "1" . :Cct3_e5 a affx:Exon ; affx:startsAt "89090373" ; affx:stopsAt "89090470" ; affx:commonToAll "1" . :Cct3_e6 a affx:Exon ; affx:startsAt "89092618" ; affx:stopsAt "89092736" ; affx:commonToAll "1" . :Cct3_e7 a affx:Exon ; affx:startsAt "89096766" ; affx:stopsAt "89096953" ; affx:commonToAll "1" . :Cct3_e8 a affx:Exon ; affx:startsAt "89099278" ; affx:stopsAt "89099428" ; affx:commonToAll "1" . :Cct3_e9 a affx:Exon ; affx:startsAt "89101067" ; affx:stopsAt "89101200" ; affx:commonToAll "1" . :Cct3_e10 a affx:Exon ; affx:startsAt "89101381" ; affx:stopsAt "89101463" ; affx:commonToAll "1" . :Cct3_e11 a affx:Exon ; affx:startsAt "89106111" ; affx:stopsAt "89106292" ; affx:commonToAll "1" . :Cct3_e12 a affx:Exon ; affx:startsAt "89108225" ; affx:stopsAt "89108471" ; affx:commonToAll "1" . :Cct3_e13 a affx:Exon ; affx:startsAt "89108779" ; affx:stopsAt "89108911" ; affx:commonToAll "1" . :Cct3_e14 a affx:Exon ; affx:startsAt "89109209" ; affx:stopsAt "89109532" ; affx:commonToAll "1" . :Ccna1 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi6680863] . :gi6680863 a affx:Transcript ; affx:unigene "iMm.4815" ; affx:translatesTo "MHRQSSKSGVALPPVGQGPDACQMLSRAQLGQDPPQRTVLGVLTENEQYRRTCGQEITAIRCFSGSENVFPAAGKKVLSDHGVNEPAKRGFDIYMDDPEQGDRDTCSGKEGIIFEDVYEVDTSMLKSDLHFLLDFNTVSPMLVDPTTHAQSEEATDFGSDVINVTEYAEEIHRYLREAEVRHRPKAHYMRKQPDITEGMRAILVDWLVEVGEEYKLRTETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPDVDEFVYITDDTYTKRQLLRMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCIRTENLAKYVAELSLLEADPFLKYLPSLVAAAAYCLANYIVNRHFWPETLAAFTGYSLNEIVPCLSELHKACLSIPHRPQQAIREKYKASKYLHVSLMEPPVVLPLQ" ; affx:hasCds [affx:startsAt "55513872" ; affx:stopsAt "55522713" ]; affx:hasExon [ affx:relatesToExon :Ccna1_e1; affx:cdsType "Partial" ; affx:cdsStart "55513872" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Ccna1_e2; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Ccna1_e3; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Ccna1_e4; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Ccna1_e5; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Ccna1_e6; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Ccna1_e7; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Ccna1_e8; affx:cdsType "Partial" ; affx:cdsStop "55522713" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Ccna1_e9; affx:cdsType "None" ] ; . :Ccna1_e1 a affx:Exon ; affx:startsAt "55513690" ; affx:stopsAt "55513924" ; affx:commonToAll "1" . :Ccna1_e2 a affx:Exon ; affx:startsAt "55514182" ; affx:stopsAt "55514316" ; affx:commonToAll "1" . :Ccna1_e3 a affx:Exon ; affx:startsAt "55515424" ; affx:stopsAt "55515538" ; affx:commonToAll "1" . :Ccna1_e4 a affx:Exon ; affx:startsAt "55516623" ; affx:stopsAt "55516828" ; affx:commonToAll "1" . :Ccna1_e5 a affx:Exon ; affx:startsAt "55517893" ; affx:stopsAt "55518117" ; affx:commonToAll "1" . :Ccna1_e6 a affx:Exon ; affx:startsAt "55518761" ; affx:stopsAt "55518886" ; affx:commonToAll "1" . :Ccna1_e7 a affx:Exon ; affx:startsAt "55519064" ; affx:stopsAt "55519311" ; affx:commonToAll "1" . :Ccna1_e8 a affx:Exon ; affx:startsAt "55522548" ; affx:stopsAt "55522734" ; affx:commonToAll "1" . :Ccna1_e9 a affx:Exon ; affx:startsAt "55523180" ; affx:stopsAt "55523271" ; affx:commonToAll "1" . :Cd2 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi4587855] . :gi4587855 a affx:Transcript ; affx:unigene "iMm.22842" ; affx:translatesTo "MKCKFLGSFFLLFSLSGKGADCRDNETIWGVLGHGITLNIPNFQMTDDIDEVRWVRRGTLVAEFKRKKPPFLISETYEVLANGSLKIKKPMMRNDSGTYNVMVYGTNGMTRLEKDLDVRILERVSKPMIHWECPNTTLTCAVLQGTDFELKLYQGETLLNSLPQKNMSYQWTNLNAPFKCEAINPVSKESKMEVVNCPEKGLSFYVTVGVGAGGLLLVLLVALFIFCICKRRKRNRRRKDEELEIKASRTSTVERGPKPHSTPAAAAQNSVALQAPPPPGHHLQTPGHRPLPPGHRTREHQQKKRPPPSGTQIHQQKGPPLPRPRVQPKPPCGSGDGVSLPPPN" ; affx:hasCds [affx:startsAt "101386923" ; affx:stopsAt "101398846" ]; affx:hasExon [ affx:relatesToExon :Cd2_e1; affx:cdsType "Partial" ; affx:cdsStart "101386923" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Cd2_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Cd2_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Cd2_e4; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Cd2_e5; affx:cdsType "Partial" ; affx:cdsStop "101398846" ; affx:frame "0"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "0" ; affx:stopsAt "22" ; affx:spannedBy [ affx:startsAt "101398791" ; affx:stopsAt "101398846" ; affx:inFrame "0" ] ; affx:spannedBy [ affx:startsAt "101398671" ; affx:stopsAt "101398682" ; affx:inFrame "2" ] ; ] ; ] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "206" ; affx:stopsAt "228" ; affx:spannedBy [ affx:startsAt "101390788" ; affx:stopsAt "101390854" ; affx:inFrame "0" ] ; ] ; ] ; . :Cd2_e1 a affx:Exon ; affx:startsAt "101386901" ; affx:stopsAt "101387240" ; affx:commonToAll "1" . :Cd2_e2 a affx:Exon ; affx:startsAt "101390754" ; affx:stopsAt "101390877" ; affx:commonToAll "1" . :Cd2_e3 a affx:Exon ; affx:startsAt "101393997" ; affx:stopsAt "101394228" ; affx:commonToAll "1" . :Cd2_e4 a affx:Exon ; affx:startsAt "101398373" ; affx:stopsAt "101398682" ; affx:commonToAll "1" . :Cd2_e5 a affx:Exon ; affx:startsAt "101398791" ; affx:stopsAt "101398903" ; affx:commonToAll "1" . :Gene3927 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi3687739] . :gi3687739 a affx:Transcript ; affx:unigene "iMm.11526" ; affx:translatesTo "MQRILMAPGQSCCALAILLAIVNFQHGGCIHVTSSASQKGGRLDLTCTLWHKKDEAEGLILFWCKDNPWNCSPETNLEQLRVKRDPETDGITEKSSQLVFTIEQATPSDSGTYQCCARSQKPEIYIHGHFLSVLVTGNHTEIRQRQRSHPDFSHINGTLSSGFLQVKAWGMLVTSLVALQALYTL" ; affx:hasCds [affx:startsAt "97104572" ; affx:stopsAt "97112860" ]; affx:hasExon [ affx:relatesToExon :Gene3927_e1; affx:cdsType "Partial" ; affx:cdsStart "97104572" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3927_e2; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3927_e3; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3927_e4; affx:cdsType "Partial" ; affx:cdsStop "97112860" ; affx:frame "0"] ; . :Gene3927_e1 a affx:Exon ; affx:startsAt "97104210" ; affx:stopsAt "97104589" ; affx:commonToAll "1" . :Gene3927_e2 a affx:Exon ; affx:startsAt "97106246" ; affx:stopsAt "97106378" ; affx:commonToAll "1" . :Gene3927_e3 a affx:Exon ; affx:startsAt "97109507" ; affx:stopsAt "97109834" ; affx:commonToAll "1" . :Gene3927_e4 a affx:Exon ; affx:startsAt "97112778" ; affx:stopsAt "97112925" ; affx:commonToAll "1" . :Car14 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi6753263] . :gi6753263 a affx:Transcript ; affx:unigene "iMm.34556" ; affx:translatesTo "MLFFALLLKVTWILAADGGHHWTYEGPHGQDHWPTSYPECGGDAQSPINIQTDSVIFDPDLPAVQPHGYDQLGTEPLDLHNNGHTVQLSLPPTLHLGGLPRKYTAAQLHLHWGQRGSLEGSEHQINSEATAAELHVVHYDSQSYSSLSEAAQKPQGLAVLGILIEVGETENPAYDHILSRLHEIRYKDQKTSVPPFSVRELFPQQLEQFFRYNGSLTTPPCYQSVLWTVFNRRAQISMGQLEKLQETLSSTEEDPSEPLVQNYRVPQPLNQRTIFASFIQAGPLYTTGEMLGLGVGILAGCLCLLLAVYFIAQKIRKKRLGNRKSVVFTSARATTEA" ; affx:hasCds [affx:startsAt "96183427" ; affx:stopsAt "96189655" ]; affx:hasExon [ affx:relatesToExon :Car14_e1; affx:cdsType "Partial" ; affx:cdsStart "96183427" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Car14_e2; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Car14_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Car14_e4; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Car14_e5; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Car14_e6; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Car14_e7; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Car14_e8; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Car14_e9; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Car14_e10; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Car14_e11; affx:cdsType "Partial" ; affx:cdsStop "96189655" ; affx:frame "0"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "0" ; affx:stopsAt "15" ; affx:spannedBy [ affx:startsAt "96189610" ; affx:stopsAt "96189655" ; affx:inFrame "0" ] ; ] ; ] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "290" ; affx:stopsAt "312" ; affx:spannedBy [ affx:startsAt "96184093" ; affx:stopsAt "96184159" ; affx:inFrame "1" ] ; ] ; ] ; . :Car14_e1 a affx:Exon ; affx:startsAt "96183081" ; affx:stopsAt "96183494" ; affx:commonToAll "1" . :Car14_e2 a affx:Exon ; affx:startsAt "96184082" ; affx:stopsAt "96184167" ; affx:commonToAll "1" . :Car14_e3 a affx:Exon ; affx:startsAt "96184258" ; affx:stopsAt "96184279" ; affx:commonToAll "1" . :Car14_e4 a affx:Exon ; affx:startsAt "96184505" ; affx:stopsAt "96184626" ; affx:commonToAll "1" . :Car14_e5 a affx:Exon ; affx:startsAt "96184712" ; affx:stopsAt "96184870" ; affx:commonToAll "1" . :Car14_e6 a affx:Exon ; affx:startsAt "96185021" ; affx:stopsAt "96185088" ; affx:commonToAll "1" . :Car14_e7 a affx:Exon ; affx:startsAt "96185212" ; affx:stopsAt "96185308" ; affx:commonToAll "1" . :Car14_e8 a affx:Exon ; affx:startsAt "96185524" ; affx:stopsAt "96185667" ; affx:commonToAll "1" . :Car14_e9 a affx:Exon ; affx:startsAt "96186373" ; affx:stopsAt "96186553" ; affx:commonToAll "1" . :Car14_e10 a affx:Exon ; affx:startsAt "96187391" ; affx:stopsAt "96187412" ; affx:commonToAll "1" . :Car14_e11 a affx:Exon ; affx:startsAt "96189600" ; affx:stopsAt "96189920" ; affx:commonToAll "1" . :sid1334 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi5931566] . :gi5931566 a affx:Transcript ; affx:unigene "iMm.3049" ; affx:translatesTo "MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIHEPEPHILLFRRPLPKKPKK" ; affx:hasCds [affx:startsAt "90258795" ; affx:stopsAt "90261098" ]; affx:hasExon [ affx:relatesToExon :sid1334_e1; affx:cdsType "Partial" ; affx:cdsStart "90258795" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :sid1334_e2; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :sid1334_e3; affx:cdsType "Partial" ; affx:cdsStop "90261098" ; affx:frame "1"] ; . :sid1334_e1 a affx:Exon ; affx:startsAt "90258356" ; affx:stopsAt "90258848" ; affx:commonToAll "1" . :sid1334_e2 a affx:Exon ; affx:startsAt "90259158" ; affx:stopsAt "90259286" ; affx:commonToAll "1" . :sid1334_e3 a affx:Exon ; affx:startsAt "90261039" ; affx:stopsAt "90261176" ; affx:commonToAll "1" . :Gene3930 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi13938123] ; affx:hasVariant [affx:representedBy :gi18542382] . :gi13938123 a affx:Transcript ; affx:unigene "iMm.175612" ; affx:translatesTo "MASGPHPTSTAAAAAAAAASASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTIDHSLIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKSDQLHLPKPG" ; affx:hasCds [affx:startsAt "66487424" ; affx:stopsAt "66490307" ]; affx:hasExon [ affx:relatesToExon :Gene3930_e1; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :Gene3930_e3; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :Gene3930_e5; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :Gene3930_e7; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :Gene3930_e9; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :Gene3930_e11; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :Gene3930_e12; affx:cdsType "Partial" ; affx:cdsStart "66487424" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3930_e13; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3930_e14; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3930_e15; affx:cdsType "Partial" ; affx:cdsStop "66490307" ; affx:frame "2"] ; . :gi18542382 a affx:Transcript ; affx:unigene "iMm.175612" ; affx:translatesTo "MASGPHPTSTAAAAAAAAASASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTIDHSLIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAKGLNLDGTPALSTLGGFSPASKPSSPREVKAEEKSPVSINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRTSRSASRSRSRTRSRSRSHSPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTREDLKSSNRHGHKRKKSRSRSQSKTRDHSDVTKKHRHERGHHRDRRERSRSFERSHKGKHHGGSRSGHGRHRR" ; affx:hasCds [affx:startsAt "66478778" ; affx:stopsAt "66490307" ]; affx:hasExon [ affx:relatesToExon :Gene3930_e2; affx:cdsType "Partial" ; affx:cdsStart "66478778" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3930_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3930_e4; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3930_e6; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3930_e7; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3930_e8; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3930_e10; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3930_e11; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3930_e13; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3930_e14; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3930_e16; affx:cdsType "Partial" ; affx:cdsStop "66490307" ; affx:frame "2"] ; . :Gene3930_e1 a affx:Exon ; affx:startsAt "66478333" ; affx:stopsAt "66479127" ; affx:commonToAll "0" . :Gene3930_e2 a affx:Exon ; affx:startsAt "66478643" ; affx:stopsAt "66479127" ; affx:commonToAll "0" . :Gene3930_e3 a affx:Exon ; affx:startsAt "66479869" ; affx:stopsAt "66479968" ; affx:commonToAll "1" . :Gene3930_e4 a affx:Exon ; affx:startsAt "66480075" ; affx:stopsAt "66480187" ; affx:commonToAll "0" . :Gene3930_e5 a affx:Exon ; affx:startsAt "66480075" ; affx:stopsAt "66480582" ; affx:commonToAll "0" . :Gene3930_e6 a affx:Exon ; affx:startsAt "66480440" ; affx:stopsAt "66480582" ; affx:commonToAll "0" . :Gene3930_e7 a affx:Exon ; affx:startsAt "66480674" ; affx:stopsAt "66480779" ; affx:commonToAll "1" . :Gene3930_e8 a affx:Exon ; affx:startsAt "66480869" ; affx:stopsAt "66480969" ; affx:commonToAll "0" . :Gene3930_e9 a affx:Exon ; affx:startsAt "66480869" ; affx:stopsAt "66482723" ; affx:commonToAll "0" . :Gene3930_e10 a affx:Exon ; affx:startsAt "66482658" ; affx:stopsAt "66482723" ; affx:commonToAll "0" . :Gene3930_e11 a affx:Exon ; affx:startsAt "66483612" ; affx:stopsAt "66483733" ; affx:commonToAll "1" . :Gene3930_e12 a affx:Exon ; affx:startsAt "66487382" ; affx:stopsAt "66487455" ; affx:commonToAll "0" . :Gene3930_e13 a affx:Exon ; affx:startsAt "66489031" ; affx:stopsAt "66489141" ; affx:commonToAll "1" . :Gene3930_e14 a affx:Exon ; affx:startsAt "66489679" ; affx:stopsAt "66489754" ; affx:commonToAll "1" . :Gene3930_e15 a affx:Exon ; affx:startsAt "66489986" ; affx:stopsAt "66490378" ; affx:commonToAll "0" . :Gene3930_e16 a affx:Exon ; affx:startsAt "66489986" ; affx:stopsAt "66490398" ; affx:commonToAll "0" . :Gene3931 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi192471] . :gi192471 a affx:Transcript ; affx:unigene "iMm.1894" ; affx:translatesTo "MRYLPWLLLWAFLQVWGQSEAQQKNYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQGKLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCEMYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSATVQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPSSAHGHRQLVCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEEAGLACRVKHSSLGGQDIILYWDARQAPVGLIVFIVLIMLVVVGAVVYYIWRRRSAYQDIR" ; affx:hasCds [affx:startsAt "87782187" ; affx:stopsAt "87784860" ]; affx:hasExon [ affx:relatesToExon :Gene3931_e1; affx:cdsType "Partial" ; affx:cdsStart "87782187" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3931_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3931_e3; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3931_e4; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3931_e5; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3931_e6; affx:cdsType "Partial" ; affx:cdsStop "87784860" ; affx:frame "0"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "0" ; affx:stopsAt "21" ; affx:spannedBy [ affx:startsAt "87784799" ; affx:stopsAt "87784860" ; affx:inFrame "0" ] ; affx:spannedBy [ affx:startsAt "87784511" ; affx:stopsAt "87784513" ; affx:inFrame "2" ] ; ] ; ] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "304" ; affx:stopsAt "326" ; affx:spannedBy [ affx:startsAt "87782308" ; affx:stopsAt "87782374" ; affx:inFrame "0" ] ; ] ; ] ; . :Gene3931_e1 a affx:Exon ; affx:startsAt "87781445" ; affx:stopsAt "87782209" ; affx:commonToAll "1" . :Gene3931_e2 a affx:Exon ; affx:startsAt "87782297" ; affx:stopsAt "87782394" ; affx:commonToAll "1" . :Gene3931_e3 a affx:Exon ; affx:startsAt "87782945" ; affx:stopsAt "87783224" ; affx:commonToAll "1" . :Gene3931_e4 a affx:Exon ; affx:startsAt "87783679" ; affx:stopsAt "87783958" ; affx:commonToAll "1" . :Gene3931_e5 a affx:Exon ; affx:startsAt "87784240" ; affx:stopsAt "87784513" ; affx:commonToAll "1" . :Gene3931_e6 a affx:Exon ; affx:startsAt "87784799" ; affx:stopsAt "87784945" ; affx:commonToAll "1" . :Gene3932 a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi12805128] . :gi12805128 a affx:Transcript ; affx:unigene "iMm.28814" ; affx:translatesTo "MTETDGFYKSREVFDPAEQYKMDHKRRGVALIFNHERFFWHLTLPERRGTNADRDNLTRRFSDLGFEVKCFNDLRAEELLLKIHEVSTSSHIDADCFICVFLSHGEGNHVYAYDAKIEIQTLTGLFKGDKCQSLVGKPKIFIIQACRGSQHDVPVVPLDMVDHQTDKLDNVTQVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLARYGSSLEFTELLTLVNRKVSQRRVDFCKDPDAIGKKQVPCFASMLTKKLHFCPKPSK" ; affx:hasCds [affx:startsAt "130416269" ; affx:stopsAt "130424366" ]; affx:hasExon [ affx:relatesToExon :Gene3932_e1; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :Gene3932_e2; affx:cdsType "Partial" ; affx:cdsStart "130416269" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3932_e3; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3932_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3932_e5; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3932_e6; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3932_e7; affx:cdsType "Partial" ; affx:cdsStop "130424366" ; affx:frame "1"] ; . :Gene3932_e1 a affx:Exon ; affx:startsAt "130412206" ; affx:stopsAt "130412249" ; affx:commonToAll "1" . :Gene3932_e2 a affx:Exon ; affx:startsAt "130416256" ; affx:stopsAt "130416298" ; affx:commonToAll "1" . :Gene3932_e3 a affx:Exon ; affx:startsAt "130416693" ; affx:stopsAt "130416843" ; affx:commonToAll "1" . :Gene3932_e4 a affx:Exon ; affx:startsAt "130417191" ; affx:stopsAt "130417268" ; affx:commonToAll "1" . :Gene3932_e5 a affx:Exon ; affx:startsAt "130421315" ; affx:stopsAt "130421491" ; affx:commonToAll "1" . :Gene3932_e6 a affx:Exon ; affx:startsAt "130422910" ; affx:stopsAt "130423067" ; affx:commonToAll "1" . :Gene3932_e7 a affx:Exon ; affx:startsAt "130424124" ; affx:stopsAt "130424744" ; affx:commonToAll "1" . :Chia-pending a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi13562107] . :gi13562107 a affx:Transcript ; affx:unigene "iMm.46418" ; affx:translatesTo "MQNNEITTIEWNDVTLYKAFNDLKNRNSKLKTLLAIGGWNFGTAPFTTMVSTSQNRQTFITSVIKFLRQYGFDGLDLDWEYPGSRGSPPQDKHLFTVLVKEMREAFEQEAIESNRPRLMVTAAVAGGISNIQAGYEIPELSKYLDFIHVMTYDLHGSWEGYTGENSPLYKYPTETGSNAYLNVDYVMNYWKNNGAPAEKLIVGFPEYGHTFILRNPSDNGIGAPTSGDGPAGPYTRQAGFWAYYEICTFLRSGATEVWDASQ" ; affx:hasCds [affx:startsAt "106600060" ; affx:stopsAt "106615753" ]; affx:hasExon [ affx:relatesToExon :Chia-pending_e1; affx:cdsType "Partial" ; affx:cdsStop "106600129" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Chia-pending_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Chia-pending_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Chia-pending_e4; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Chia-pending_e5; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Chia-pending_e6; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Chia-pending_e7; affx:cdsType "Full" ; affx:frame "1"] ; . :Chia-pending_e1 a affx:Exon ; affx:startsAt "106600060" ; affx:stopsAt "106600138" ; affx:commonToAll "1" . :Chia-pending_e2 a affx:Exon ; affx:startsAt "106606407" ; affx:stopsAt "106606464" ; affx:commonToAll "1" . :Chia-pending_e3 a affx:Exon ; affx:startsAt "106607135" ; affx:stopsAt "106607301" ; affx:commonToAll "1" . :Chia-pending_e4 a affx:Exon ; affx:startsAt "106613227" ; affx:stopsAt "106613352" ; affx:commonToAll "1" . :Chia-pending_e5 a affx:Exon ; affx:startsAt "106613528" ; affx:stopsAt "106613652" ; affx:commonToAll "1" . :Chia-pending_e6 a affx:Exon ; affx:startsAt "106613912" ; affx:stopsAt "106614098" ; affx:commonToAll "1" . :Chia-pending_e7 a affx:Exon ; affx:startsAt "106615699" ; affx:stopsAt "106615753" ; affx:commonToAll "1" . :Cpa3 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi6680998] . :gi6680998 a affx:Transcript ; affx:unigene "iMm.1135" ; affx:translatesTo "MRFFLLMAVIYTTLAIAPVHFDREKVFRVKLQNEKHASVLKNLTQSIELDFWYPDAIHDIAVNMTVDFRVSEKESQTIQSTLEQHKIHYEILIHDLQEEIEKQFDVKDEIAGRHSYAKYNDWDKIVSWTEKMLEKHPEMVSRIKIGSTVEDNPLYVLKIGKKDGERKAIFMDCGIHAREWISPAFCQWFVYQATKSYGKNKIMTKLLDRMNFYVLPVFNVDGYIWSWTQDRMWRKNRSRNQNSTCIGTDLNRNFDVSWDSSPNTNKPCLNVYRGPAPESEKETKAVTNFIRSHLNSIKAYITFHSYSQMLLIPYGYTFKLPPNHQDLLKVARIATDALSTRYETRYIYGPIASTIYKTSGSSLDWVYDLGIKHTFAFELRDKGKSGFLLPESRIKPTCKETMLSVKFIAKYILKNTS" ; affx:hasCds [affx:startsAt "19954452" ; affx:stopsAt "19980817" ]; affx:hasExon [ affx:relatesToExon :Cpa3_e1; affx:cdsType "Partial" ; affx:cdsStart "19954452" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Cpa3_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Cpa3_e3; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Cpa3_e4; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Cpa3_e5; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Cpa3_e6; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Cpa3_e7; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Cpa3_e8; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Cpa3_e9; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Cpa3_e10; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Cpa3_e11; affx:cdsType "Partial" ; affx:cdsStop "19980817" ; affx:frame "1"] ; . :Cpa3_e1 a affx:Exon ; affx:startsAt "19954270" ; affx:stopsAt "19954640" ; affx:commonToAll "1" . :Cpa3_e2 a affx:Exon ; affx:startsAt "19958402" ; affx:stopsAt "19958487" ; affx:commonToAll "1" . :Cpa3_e3 a affx:Exon ; affx:startsAt "19960734" ; affx:stopsAt "19960937" ; affx:commonToAll "1" . :Cpa3_e4 a affx:Exon ; affx:startsAt "19961879" ; affx:stopsAt "19961970" ; affx:commonToAll "1" . :Cpa3_e5 a affx:Exon ; affx:startsAt "19963734" ; affx:stopsAt "19963845" ; affx:commonToAll "1" . :Cpa3_e6 a affx:Exon ; affx:startsAt "19965812" ; affx:stopsAt "19965914" ; affx:commonToAll "1" . :Cpa3_e7 a affx:Exon ; affx:startsAt "19967455" ; affx:stopsAt "19967557" ; affx:commonToAll "1" . :Cpa3_e8 a affx:Exon ; affx:startsAt "19967661" ; affx:stopsAt "19967764" ; affx:commonToAll "1" . :Cpa3_e9 a affx:Exon ; affx:startsAt "19978199" ; affx:stopsAt "19978324" ; affx:commonToAll "1" . :Cpa3_e10 a affx:Exon ; affx:startsAt "19980560" ; affx:stopsAt "19980636" ; affx:commonToAll "1" . :Cpa3_e11 a affx:Exon ; affx:startsAt "19980749" ; affx:stopsAt "19980823" ; affx:commonToAll "1" . :Car3 a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi6671675] . :gi6671675 a affx:Transcript ; affx:unigene "iMm.300" ; affx:translatesTo "MAKEWGYASHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLQPWSASYDPGSAKTILNNGKTCRVVFDDTYDRSMLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNPKYNTFGEALKQPDGIAVVGIFLKIGREKGEFQILLDALDKIKTKGKEAPFTHFDPSCLFPACRDYWTYHGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLFSSAENEPPVPLVGNWRPPQPVKGRVVRASFK" ; affx:hasCds [affx:startsAt "14974272" ; affx:stopsAt "14982261" ]; affx:hasExon [ affx:relatesToExon :Car3_e1; affx:cdsType "Partial" ; affx:cdsStart "14974272" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Car3_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Car3_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Car3_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Car3_e5; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Car3_e6; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Car3_e7; affx:cdsType "Partial" ; affx:cdsStop "14982261" ; affx:frame "0"] ; . :Car3_e1 a affx:Exon ; affx:startsAt "14974220" ; affx:stopsAt "14974306" ; affx:commonToAll "1" . :Car3_e2 a affx:Exon ; affx:startsAt "14974950" ; affx:stopsAt "14975148" ; affx:commonToAll "1" . :Car3_e3 a affx:Exon ; affx:startsAt "14977402" ; affx:stopsAt "14977521" ; affx:commonToAll "1" . :Car3_e4 a affx:Exon ; affx:startsAt "14978948" ; affx:stopsAt "14979041" ; affx:commonToAll "1" . :Car3_e5 a affx:Exon ; affx:startsAt "14979834" ; affx:stopsAt "14979897" ; affx:commonToAll "1" . :Car3_e6 a affx:Exon ; affx:startsAt "14980641" ; affx:stopsAt "14980797" ; affx:commonToAll "1" . :Car3_e7 a affx:Exon ; affx:startsAt "14982141" ; affx:stopsAt "14982463" ; affx:commonToAll "1" . :mitsugumin29 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi3461887] . :gi3461887 a affx:Transcript ; affx:unigene "iMm.20942" ; affx:translatesTo "MSSTESPGRTSDKSPRQQVDRLLLGLRWQRLEEPLGFIKVLQWLFAIFAFGSCGSYSGETGALVLCNNEAKDVSSIIVLFGYPFRLYQVQYEMPLCDQDSTSKTMNLMGDFSAPAEFFVTLGIFSFFYTMAALVIYLRFHKLYTENKRFPLVDFCVTVSFTFFWLVAAAAWGKGLTDVKGATRPSSLTAAMSVCHGEEAVCSAGATPSMGLANLSVLFGFINFFLWAGNCWFVFKETPWHGQGQDQGQGPSQESAAEQGAVEKQ" ; affx:hasCds [affx:startsAt "108706146" ; affx:stopsAt "108718028" ]; affx:hasExon [ affx:relatesToExon :mitsugumin29_e1; affx:cdsType "Partial" ; affx:cdsStart "108706146" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :mitsugumin29_e2; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :mitsugumin29_e3; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :mitsugumin29_e4; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :mitsugumin29_e5; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :mitsugumin29_e6; affx:cdsType "Partial" ; affx:cdsStop "108718028" ; affx:frame "2"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "3" ; affx:containsMotif [ affx:startsAt "115" ; affx:stopsAt "137" ; affx:spannedBy [ affx:startsAt "108709243" ; affx:stopsAt "108709309" ; affx:inFrame "2" ] ; ] ; affx:containsMotif [ affx:startsAt "149" ; affx:stopsAt "171" ; affx:spannedBy [ affx:startsAt "108709198" ; affx:stopsAt "108709207" ; affx:inFrame "2" ] ; affx:spannedBy [ affx:startsAt "108708322" ; affx:stopsAt "108708379" ; affx:inFrame "1" ] ; ] ; affx:containsMotif [ affx:startsAt "212" ; affx:stopsAt "234" ; affx:spannedBy [ affx:startsAt "108708187" ; affx:stopsAt "108708199" ; affx:inFrame "1" ] ; affx:spannedBy [ affx:startsAt "108706239" ; affx:stopsAt "108706293" ; affx:inFrame "0" ] ; ] ; ] ; . :mitsugumin29_e1 a affx:Exon ; affx:startsAt "108703876" ; affx:stopsAt "108706293" ; affx:commonToAll "1" . :mitsugumin29_e2 a affx:Exon ; affx:startsAt "108708187" ; affx:stopsAt "108708379" ; affx:commonToAll "1" . :mitsugumin29_e3 a affx:Exon ; affx:startsAt "108709198" ; affx:stopsAt "108709400" ; affx:commonToAll "1" . :mitsugumin29_e4 a affx:Exon ; affx:startsAt "108710651" ; affx:stopsAt "108710776" ; affx:commonToAll "1" . :mitsugumin29_e5 a affx:Exon ; affx:startsAt "108717733" ; affx:stopsAt "108717808" ; affx:commonToAll "1" . :mitsugumin29_e6 a affx:Exon ; affx:startsAt "108717974" ; affx:stopsAt "108718210" ; affx:commonToAll "1" . :Gene3937 a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi16741127] . :gi16741127 a affx:Transcript ; affx:unigene "iMm.20922" ; affx:translatesTo "MADDLKRFLYKKLPSVEGLHAIVVSDRDGVPVIKVANDSAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSANTGLIVSLEKELAPLFEELIKVVEVS" ; affx:hasCds [affx:startsAt "138420683" ; affx:stopsAt "138429882" ]; affx:hasExon [ affx:relatesToExon :Gene3937_e1; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :Gene3937_e2; affx:cdsType "Partial" ; affx:cdsStart "138420683" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3937_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3937_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3937_e5; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3937_e6; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3937_e7; affx:cdsType "Partial" ; affx:cdsStop "138429882" ; affx:frame "1"] ; . :Gene3937_e1 a affx:Exon ; affx:startsAt "138420345" ; affx:stopsAt "138420437" ; affx:commonToAll "1" . :Gene3937_e2 a affx:Exon ; affx:startsAt "138420646" ; affx:stopsAt "138420692" ; affx:commonToAll "1" . :Gene3937_e3 a affx:Exon ; affx:startsAt "138421694" ; affx:stopsAt "138421729" ; affx:commonToAll "1" . :Gene3937_e4 a affx:Exon ; affx:startsAt "138426973" ; affx:stopsAt "138427032" ; affx:commonToAll "1" . :Gene3937_e5 a affx:Exon ; affx:startsAt "138428670" ; affx:stopsAt "138428804" ; affx:commonToAll "1" . :Gene3937_e6 a affx:Exon ; affx:startsAt "138429208" ; affx:stopsAt "138429272" ; affx:commonToAll "1" . :Gene3937_e7 a affx:Exon ; affx:startsAt "138429808" ; affx:stopsAt "138430629" ; affx:commonToAll "1" . :Mme a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi6678889] . :gi6678889 a affx:Transcript ; affx:unigene "iMm.38931" ; affx:translatesTo "MGRSESQMDITDINAPKPKKKQRWTPLEISLSVLVLLLTIIAVTMIALYATYDDGICKSSDCIKSAARLIQNMDASVEPCTDFFKYACGGWLKRNVIPETSSRYSNFDILRDELEVILKDVLQEPKTEDIVAVQKAKTLYRSCINESAIDSRGGQPLLKLLPDIYGWPVASDNWDQTYGTSWTAEKSIAQLNSKYGKKVLINFFVGTDDKNSTQHIIHFDQPRLGLPSRDYYECTGIYKEACTAYVDFMISVARLIRQEQSLPIDENQLSLEMNKVMELEKEIANATTKPEDRNDPMLLYNKMTLAKLQNNFSLEVNGKSFSWSNFTNEIMSTVNINIQNEEEVVVYAPEYLTKLKPILTKYSPRDLQNLMSWRFIMDLVSSLSRNYKESRNAFRKALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKKAEEKALAIKERIGYPDDIISNENKLNNEYLELNYREDEYFENIIQNLKFSQSKQLKKLREKVDKDEWISGAAVVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSANNFKDQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADNGGIGQAYRAYQNYVKKNGEEKLLPGLDLNHKQLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFADAFHCRKNSYMNPERKCRVW" ; affx:hasCds [affx:startsAt "63865545" ; affx:stopsAt "63945958" ]; affx:hasExon [ affx:relatesToExon :Mme_e1; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Mme_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Mme_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Mme_e4; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Mme_e5; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Mme_e6; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Mme_e7; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Mme_e8; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Mme_e9; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Mme_e10; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Mme_e11; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Mme_e12; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Mme_e13; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Mme_e14; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Mme_e15; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Mme_e16; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Mme_e17; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Mme_e18; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Mme_e19; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Mme_e20; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Mme_e21; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Mme_e22; affx:cdsType "Full" ; affx:frame "1"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "29" ; affx:stopsAt "51" ; affx:spannedBy [ affx:startsAt "63865632" ; affx:stopsAt "63865698" ; affx:inFrame "0" ] ; ] ; ] ; . :Mme_e1 a affx:Exon ; affx:startsAt "63865545" ; affx:stopsAt "63865705" ; affx:commonToAll "1" . :Mme_e2 a affx:Exon ; affx:startsAt "63866389" ; affx:stopsAt "63866425" ; affx:commonToAll "1" . :Mme_e3 a affx:Exon ; affx:startsAt "63892124" ; affx:stopsAt "63892286" ; affx:commonToAll "1" . :Mme_e4 a affx:Exon ; affx:startsAt "63893195" ; affx:stopsAt "63893276" ; affx:commonToAll "1" . :Mme_e5 a affx:Exon ; affx:startsAt "63893382" ; affx:stopsAt "63893478" ; affx:commonToAll "1" . :Mme_e6 a affx:Exon ; affx:startsAt "63893580" ; affx:stopsAt "63893699" ; affx:commonToAll "1" . :Mme_e7 a affx:Exon ; affx:startsAt "63895060" ; affx:stopsAt "63895126" ; affx:commonToAll "1" . :Mme_e8 a affx:Exon ; affx:startsAt "63905428" ; affx:stopsAt "63905563" ; affx:commonToAll "1" . :Mme_e9 a affx:Exon ; affx:startsAt "63907319" ; affx:stopsAt "63907421" ; affx:commonToAll "1" . :Mme_e10 a affx:Exon ; affx:startsAt "63908909" ; affx:stopsAt "63909046" ; affx:commonToAll "1" . :Mme_e11 a affx:Exon ; affx:startsAt "63909154" ; affx:stopsAt "63909248" ; affx:commonToAll "1" . :Mme_e12 a affx:Exon ; affx:startsAt "63910537" ; affx:stopsAt "63910666" ; affx:commonToAll "1" . :Mme_e13 a affx:Exon ; affx:startsAt "63911466" ; affx:stopsAt "63911565" ; affx:commonToAll "1" . :Mme_e14 a affx:Exon ; affx:startsAt "63912549" ; affx:stopsAt "63912630" ; affx:commonToAll "1" . :Mme_e15 a affx:Exon ; affx:startsAt "63914030" ; affx:stopsAt "63914134" ; affx:commonToAll "1" . :Mme_e16 a affx:Exon ; affx:startsAt "63924426" ; affx:stopsAt "63924485" ; affx:commonToAll "1" . :Mme_e17 a affx:Exon ; affx:startsAt "63927554" ; affx:stopsAt "63927674" ; affx:commonToAll "1" . :Mme_e18 a affx:Exon ; affx:startsAt "63930386" ; affx:stopsAt "63930520" ; affx:commonToAll "1" . :Mme_e19 a affx:Exon ; affx:startsAt "63930621" ; affx:stopsAt "63930687" ; affx:commonToAll "1" . :Mme_e20 a affx:Exon ; affx:startsAt "63934103" ; affx:stopsAt "63934199" ; affx:commonToAll "1" . :Mme_e21 a affx:Exon ; affx:startsAt "63934504" ; affx:stopsAt "63934581" ; affx:commonToAll "1" . :Mme_e22 a affx:Exon ; affx:startsAt "63945858" ; affx:stopsAt "63945958" ; affx:commonToAll "1" . :Gene3939 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi192806] ; affx:hasVariant [affx:representedBy :gi6681042] . :gi192806 a affx:Transcript ; affx:unigene "iMm.795" ; affx:translatesTo "MTARGAAGRCPSSTWLGSRLLLVCLLMSRSIAKEVSEHCSHMIGNGHLKVLQQLIDSQMETSCQIAFEFVDQEQLDDPVCYLKKAFFLVQDIIDETMRFKDNTPNANATERLQELSNNLNSCFTKDYEEQNKACVRTFHETPLQLLEKIKNFFNETKNLLEKDWNIFTKNCNNSFAKCSSRDVVTKPDCNCLYPKATPSSDPASASPHQPPAPSMAPLAGLAWDDSQRTEGSSLLPSELPLRIEDPGSAKQRPPRSTCQTLESTEQPNHGDRLTEDSQPHPSAGGPVPGVEDILESSLGTNWVLEEASGEASEGFLTQEAKFSPSTPVGGSIQAETDRPRALSASPFPKSTEDQKPVDITDRPLTEVNPMRPIGQTQNNTPEKTDGTSTLREDHQEPGSPHIATPNPQRVSNSATPVAQLLLPKSHSWGIVLPLGELEGKRSTRDRRSPAELEGGSASEGAARPVARFNSIPLTDTGHVEQHEGSSDPQIPESVFHLLVPGIILVLLTVGGLLFYKWKWRSHRDPQTLDSSVGRPEDSSLTQDEDRQVELPV" ; affx:hasCds [affx:startsAt "108241727" ; affx:stopsAt "108255052" ]; affx:hasExon [ affx:relatesToExon :Gene3939_e2; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :Gene3939_e4; affx:cdsType "Partial" ; affx:cdsStart "108241727" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3939_e5; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3939_e6; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3939_e7; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3939_e8; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3939_e9; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3939_e10; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3939_e11; affx:cdsType "Partial" ; affx:cdsStop "108255052" ; affx:frame "2"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "0" ; affx:stopsAt "32" ; affx:spannedBy [ affx:startsAt "108255013" ; affx:stopsAt "108255052" ; affx:inFrame "2" ] ; affx:spannedBy [ affx:startsAt "108251671" ; affx:stopsAt "108251728" ; affx:inFrame "1" ] ; ] ; ] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "493" ; affx:stopsAt "515" ; affx:spannedBy [ affx:startsAt "108243157" ; affx:stopsAt "108243223" ; affx:inFrame "0" ] ; ] ; ] ; . :gi6681042 a affx:Transcript ; affx:unigene "iMm.795" ; affx:translatesTo "MTARGAAGRCPSSTWLGSRLLLVCLLMSRSIAKEVSEHCSHMIGNGHLKVLQQLIDSQMETSCQIAFEFVDQEQLDDPVCYLKKAFFLVQDIIDETMRFKDNTPNANATERLQELSNNLNSCFTKDYEEQNKACVRTFHETPLQLLEKIKNFFNETKNLLEKDWNIFTKNCNNSFAKCSSRDVVTKPDCNCLYPKATPSSDPASASPHQPPAPSMAPLAGLAWDDSQRTEGSSLLPSELPLRIEDPGSAKQRPPRSTCQTLESTEQPNHGDRLTEDSQPHPSAGGPVPGVEDILESSLGTNWVLEEASGEASEGFLTQEAKFSPSTPVGGSIQAETDRPRALSASPFPKSTEDQKPVDITDRPLTEVNPMRPIGQTQNNTPEKTDGTSTLREDHQEPGSPHIATPNPQRVSNSATPVAQLLLPKSHSWGIVLPLGELEGKRSTRDRRSPAELEGGSASEGAARPVARFNSIPLTDTGHVEQHEGSSDPQIPESVFHLLVPGIILVLLTVGGLLFYKWKWRSHRDPQTLDSSVGRPEDSSLTQDEDRQVELPV" ; affx:hasCds [affx:startsAt "108241727" ; affx:stopsAt "108255052" ]; affx:hasExon [ affx:relatesToExon :Gene3939_e1; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :Gene3939_e3; affx:cdsType "Partial" ; affx:cdsStart "108241727" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3939_e5; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3939_e6; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3939_e7; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3939_e8; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3939_e9; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3939_e10; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3939_e12; affx:cdsType "Partial" ; affx:cdsStop "108255052" ; affx:frame "2"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "0" ; affx:stopsAt "32" ; affx:spannedBy [ affx:startsAt "108255013" ; affx:stopsAt "108255052" ; affx:inFrame "2" ] ; affx:spannedBy [ affx:startsAt "108251671" ; affx:stopsAt "108251728" ; affx:inFrame "1" ] ; ] ; ] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "493" ; affx:stopsAt "515" ; affx:spannedBy [ affx:startsAt "108243157" ; affx:stopsAt "108243223" ; affx:inFrame "0" ] ; ] ; ] ; . :Gene3939_e1 a affx:Exon ; affx:startsAt "108236045" ; affx:stopsAt "108238134" ; affx:commonToAll "0" . :Gene3939_e2 a affx:Exon ; affx:startsAt "108240593" ; affx:stopsAt "108240830" ; affx:commonToAll "0" . :Gene3939_e3 a affx:Exon ; affx:startsAt "108241714" ; affx:stopsAt "108241773" ; affx:commonToAll "0" . :Gene3939_e4 a affx:Exon ; affx:startsAt "108241715" ; affx:stopsAt "108241773" ; affx:commonToAll "0" . :Gene3939_e5 a affx:Exon ; affx:startsAt "108242095" ; affx:stopsAt "108242148" ; affx:commonToAll "1" . :Gene3939_e6 a affx:Exon ; affx:startsAt "108243142" ; affx:stopsAt "108244158" ; affx:commonToAll "1" . :Gene3939_e7 a affx:Exon ; affx:startsAt "108245299" ; affx:stopsAt "108245447" ; affx:commonToAll "1" . :Gene3939_e8 a affx:Exon ; affx:startsAt "108248720" ; affx:stopsAt "108248891" ; affx:commonToAll "1" . :Gene3939_e9 a affx:Exon ; affx:startsAt "108250419" ; affx:stopsAt "108250482" ; affx:commonToAll "1" . :Gene3939_e10 a affx:Exon ; affx:startsAt "108251605" ; affx:stopsAt "108251728" ; affx:commonToAll "1" . :Gene3939_e11 a affx:Exon ; affx:startsAt "108255013" ; affx:stopsAt "108255121" ; affx:commonToAll "0" . :Gene3939_e12 a affx:Exon ; affx:startsAt "108255013" ; affx:stopsAt "108255211" ; affx:commonToAll "0" . :Mds1 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi10946815] . :gi10946815 a affx:Transcript ; affx:unigene "iMm.42023" ; affx:translatesTo "MRSKGRARKLATSNECAYGNYPEIPLEEMPDADADGITSVPSLHIQEPCSPATSSESFTPKEGSPYKAPIYIPDDIPIPDEFELRESTMPGAGLGIWTKRKIEIGEKFGPYMGEQRSDLKDSSYGWENR" ; affx:hasCds [affx:startsAt "30049326" ; affx:stopsAt "30323758" ]; affx:hasExon [ affx:relatesToExon :Mds1_e1; affx:cdsType "Partial" ; affx:cdsStart "30049326" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Mds1_e2; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Mds1_e3; affx:cdsType "Partial" ; affx:cdsStop "30323758" ; affx:frame "0"] ; . :Mds1_e1 a affx:Exon ; affx:startsAt "30048662" ; affx:stopsAt "30049335" ; affx:commonToAll "1" . :Mds1_e2 a affx:Exon ; affx:startsAt "30050071" ; affx:stopsAt "30050415" ; affx:commonToAll "1" . :Mds1_e3 a affx:Exon ; affx:startsAt "30323721" ; affx:stopsAt "30323779" ; affx:commonToAll "1" . :Cyr61 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi6753593] . :gi6753593 a affx:Transcript ; affx:unigene "iMm.1231" ; affx:translatesTo "MSSSTFRTLAVAVTLLHLTRLALSTCPAACHCPLEAPKCAPGVGLVRDGCGCCKVCAKQLNEDCSKTQPCDHTKGLECNFGASSTALKGICRAQSEGRPCEYNSRIYQNGESFQPNCKHQCTCIDGAVGCIPLCPQELSLPNLGCPNPRLVKVSGQCCEEWVCDEDSIKDSLDDQDDLLGLDASEVELTRNNELIAIGKGSSLKRLPVFGTEPRVLFNPLHAHGQKCIVQTTSWSQCSKSCGTGISTRVTNDNPECRLVKETRICEVRPCGQPVYSSLKKGKKCSKTKKSPEPVRFTYAGCSSVKKYRPKYCGSCVDGRCCTPLQTRTVKMRFRCEDGEMFSKNVMMIQSCKCNYNCPHPNEASFRLYSLFNDIHKFRD" ; affx:hasCds [affx:startsAt "146184302" ; affx:stopsAt "146186429" ]; affx:hasExon [ affx:relatesToExon :Cyr61_e1; affx:cdsType "Partial" ; affx:cdsStart "146184302" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Cyr61_e2; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Cyr61_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Cyr61_e4; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Cyr61_e5; affx:cdsType "Partial" ; affx:cdsStop "146186429" ; affx:frame "2"] ; . :Cyr61_e1 a affx:Exon ; affx:startsAt "146183612" ; affx:stopsAt "146184605" ; affx:commonToAll "1" . :Cyr61_e2 a affx:Exon ; affx:startsAt "146184833" ; affx:stopsAt "146185048" ; affx:commonToAll "1" . :Cyr61_e3 a affx:Exon ; affx:startsAt "146185169" ; affx:stopsAt "146185514" ; affx:commonToAll "1" . :Cyr61_e4 a affx:Exon ; affx:startsAt "146185858" ; affx:stopsAt "146186072" ; affx:commonToAll "1" . :Cyr61_e5 a affx:Exon ; affx:startsAt "146186366" ; affx:stopsAt "146186618" ; affx:commonToAll "1" . :Gene3942 a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi474277] . :gi474277 a affx:Transcript ; affx:unigene "iMm.4389" ; affx:translatesTo "MTTPALLPLSGRRIPPLNLGPPSFPHHRATLRLSEKFILLLILSAFITLCFGAFFFLPDSSKHKRFDLGLEDVLIPHVDAGKGAKNPGVFLIHGPDEHRHREEEERLRNKIRADHEKALEEAKEKLRKSREEIRAEIQTEKNKVAQAMKTKETRVLPPVPVPQRVGVSGGDPEDMEIKKKRDKIKEMMKHAWDNYRTYGWGHNELRPIARKGHSTNIFGSSQMGATIVDALDTLYIMGLHDEFMDGQRWIEENLDFSVNSEVSVFEVNIRFIGGLLAAYYLSGEEIFKTKAVQLAEKLLPAFNTPTGIPWAMVNLKSGVGRNWGWASAGSSILAEFGTLHMEFVHLSYLTGDLTYYNKVMHIRKLLQKMERPNGLYPNYLNPRTGRWGQYHTSVGGLGDSFYEYLLKAWLMSDKTDHEARRMYDDAVEAIEKHLIKKSRGGLVFIGEWKNGHLERKMGHLACFAGGMFALGADGSRKDKAGHYLELGAEIARTCHESYDRTALKLGPESFKFDGAVEAVAVRQAEKYYILRPEVIETYWYLWRFTHDPRYRQWGWEAALAIEKSCRVSGGFSGVKDVYAPTPVHDDVQQSFFLAETLKYLYLLFSGDDLLPLDHWVFNTEAHPLPVLRLANSTLSGNPAVR" ; affx:hasCds [affx:startsAt "100668339" ; affx:stopsAt "100785811" ]; affx:hasExon [ affx:relatesToExon :Gene3942_e1; affx:cdsType "Partial" ; affx:cdsStart "100668339" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3942_e2; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3942_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3942_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3942_e5; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3942_e6; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3942_e7; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3942_e8; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3942_e9; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3942_e10; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3942_e11; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3942_e12; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3942_e13; affx:cdsType "Partial" ; affx:cdsStop "100785811" ; affx:frame "1"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "37" ; affx:stopsAt "56" ; affx:spannedBy [ affx:startsAt "100785643" ; affx:stopsAt "100785700" ; affx:inFrame "1" ] ; ] ; ] ; . :Gene3942_e1 a affx:Exon ; affx:startsAt "100667610" ; affx:stopsAt "100668472" ; affx:commonToAll "1" . :Gene3942_e2 a affx:Exon ; affx:startsAt "100679205" ; affx:stopsAt "100679321" ; affx:commonToAll "1" . :Gene3942_e3 a affx:Exon ; affx:startsAt "100682714" ; affx:stopsAt "100682887" ; affx:commonToAll "1" . :Gene3942_e4 a affx:Exon ; affx:startsAt "100688447" ; affx:stopsAt "100688667" ; affx:commonToAll "1" . :Gene3942_e5 a affx:Exon ; affx:startsAt "100692562" ; affx:stopsAt "100692678" ; affx:commonToAll "1" . :Gene3942_e6 a affx:Exon ; affx:startsAt "100717908" ; affx:stopsAt "100718002" ; affx:commonToAll "1" . :Gene3942_e7 a affx:Exon ; affx:startsAt "100720974" ; affx:stopsAt "100721098" ; affx:commonToAll "1" . :Gene3942_e8 a affx:Exon ; affx:startsAt "100733449" ; affx:stopsAt "100733544" ; affx:commonToAll "1" . :Gene3942_e9 a affx:Exon ; affx:startsAt "100745489" ; affx:stopsAt "100745570" ; affx:commonToAll "1" . :Gene3942_e10 a affx:Exon ; affx:startsAt "100747940" ; affx:stopsAt "100748059" ; affx:commonToAll "1" . :Gene3942_e11 a affx:Exon ; affx:startsAt "100753487" ; affx:stopsAt "100753584" ; affx:commonToAll "1" . :Gene3942_e12 a affx:Exon ; affx:startsAt "100756967" ; affx:stopsAt "100757223" ; affx:commonToAll "1" . :Gene3942_e13 a affx:Exon ; affx:startsAt "100785509" ; affx:stopsAt "100786399" ; affx:commonToAll "1" . :Ctsk a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi6681084] . :gi6681084 a affx:Transcript ; affx:unigene "iMm.3109" ; affx:translatesTo "MWVFKFLLLPMVSFALSPEEMLDTQWELWKKTHQKQYNSKVDEISRRLIWEKNLKQISAHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLRIPPSRSYSNDTLYTPEWEGRVPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVTENYGCGGGYMTTAFQYVQQNGGIDSEDAYPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENCDRDNVNHAVLVVGYGTQKGSKHWIIKNSWGESWGNKGYALLARNKNNACGITNMASFPKM" ; affx:hasCds [affx:startsAt "95783043" ; affx:stopsAt "95791139" ]; affx:hasExon [ affx:relatesToExon :Ctsk_e1; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Ctsk_e2; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Ctsk_e3; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Ctsk_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Ctsk_e5; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Ctsk_e6; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Ctsk_e7; affx:cdsType "Full" ; affx:frame "1"] ; . :Ctsk_e1 a affx:Exon ; affx:startsAt "95783043" ; affx:stopsAt "95783163" ; affx:commonToAll "1" . :Ctsk_e2 a affx:Exon ; affx:startsAt "95783555" ; affx:stopsAt "95783678" ; affx:commonToAll "1" . :Ctsk_e3 a affx:Exon ; affx:startsAt "95783759" ; affx:stopsAt "95783915" ; affx:commonToAll "1" . :Ctsk_e4 a affx:Exon ; affx:startsAt "95784790" ; affx:stopsAt "95785009" ; affx:commonToAll "1" . :Ctsk_e5 a affx:Exon ; affx:startsAt "95788771" ; affx:stopsAt "95788937" ; affx:commonToAll "1" . :Ctsk_e6 a affx:Exon ; affx:startsAt "95789122" ; affx:stopsAt "95789228" ; affx:commonToAll "1" . :Ctsk_e7 a affx:Exon ; affx:startsAt "95791039" ; affx:stopsAt "95791139" ; affx:commonToAll "1" . :Mlf1 a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi6754701] . :gi6754701 a affx:Transcript ; affx:unigene "iMm.10414" ; affx:translatesTo "MFRMLSSSFEDDPFFADSFLAHRESMRNMMRSFSEPLGRDLLSISDGRGRTHNRRERDDGEDSLTHADVNPFQTMDRMMANMRSGIQELQRNFGQLSMDPNGHSFCSSSVMTYSKVGDEPPKVFQASTQTRRAPGGVKETRKAMRDSDSGLERMAVGHHIHDRGHVIRKSKNNKTGDEEVNQEFINMNESDAHAFDDEWQNEVLKYKSIGRSGNTGMRSVGHEHPGSRELKRREKIHRNSAIESGRRSNVFVDKLNVKGSPVKITKK" ; affx:hasCds [affx:startsAt "67979787" ; affx:stopsAt "68005311" ]; affx:hasExon [ affx:relatesToExon :Mlf1_e1; affx:cdsType "Partial" ; affx:cdsStart "67979787" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Mlf1_e2; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Mlf1_e3; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Mlf1_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Mlf1_e5; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Mlf1_e6; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Mlf1_e7; affx:cdsType "Partial" ; affx:cdsStop "68005311" ; affx:frame "1"] ; . :Mlf1_e1 a affx:Exon ; affx:startsAt "67979762" ; affx:stopsAt "67979834" ; affx:commonToAll "1" . :Mlf1_e2 a affx:Exon ; affx:startsAt "67990057" ; affx:stopsAt "67990205" ; affx:commonToAll "1" . :Mlf1_e3 a affx:Exon ; affx:startsAt "67998395" ; affx:stopsAt "67998479" ; affx:commonToAll "1" . :Mlf1_e4 a affx:Exon ; affx:startsAt "67999438" ; affx:stopsAt "67999567" ; affx:commonToAll "1" . :Mlf1_e5 a affx:Exon ; affx:startsAt "68000755" ; affx:stopsAt "68000915" ; affx:commonToAll "1" . :Mlf1_e6 a affx:Exon ; affx:startsAt "68003284" ; affx:stopsAt "68003414" ; affx:commonToAll "1" . :Mlf1_e7 a affx:Exon ; affx:startsAt "68005205" ; affx:stopsAt "68005466" ; affx:commonToAll "1" . :Madh9 a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi9506876] . :gi9506876 a affx:Transcript ; affx:unigene "iMm.143723" ; affx:translatesTo "MHPSTPISSLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDSLVKKLKKKKGAMDELERALSCPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPYHYRRVETPVLPPVLVPRHSEYNPQLSLLAKFRSASLHSEPLMPHNATYPDSFQQSLCPAPPSSPGHVFPQSPCPTSYPHSPGSPSDSPYQHSDFRPVCYEEPQHWCSVAYYELNNRVGETFQASSRSVLIDGFTDPSNNRNRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECVSDSSIFVQSRNCNYQHGFHPATVCKIPSGCSLKVFNNQLFAQLLAQSVHHGFEVVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNPISSVS" ; affx:hasCds [affx:startsAt "55249603" ; affx:stopsAt "55265355" ]; affx:hasExon [ affx:relatesToExon :Madh9_e1; affx:cdsType "Partial" ; affx:cdsStart "55249603" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Madh9_e2; affx:cdsType "Partial" ; affx:cdsStop "55254144" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Madh9_e3; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Madh9_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Madh9_e5; affx:cdsType "Partial" ; affx:cdsStop "55265355" ; affx:frame "2"] ; . :Madh9_e1 a affx:Exon ; affx:startsAt "55249600" ; affx:stopsAt "55250015" ; affx:commonToAll "1" . :Madh9_e2 a affx:Exon ; affx:startsAt "55253917" ; affx:stopsAt "55254175" ; affx:commonToAll "1" . :Madh9_e3 a affx:Exon ; affx:startsAt "55257039" ; affx:stopsAt "55257261" ; affx:commonToAll "1" . :Madh9_e4 a affx:Exon ; affx:startsAt "55262085" ; affx:stopsAt "55262342" ; affx:commonToAll "1" . :Madh9_e5 a affx:Exon ; affx:startsAt "55265211" ; affx:stopsAt "55265358" ; affx:commonToAll "1" . :Mtx a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi7305290] . :gi7305290 a affx:Transcript ; affx:unigene "iMm.22508" ; affx:translatesTo "MAAPMELFCWSGGWGLPSVDLDSLAVLTYTRFTGAPLKIHKTSNPWQSPSGTLPALRTSDGKVITVPHKIITHLRKEKYNADYDLSARQGADTLAFMSLLEEKLLPVLIHTFWIDAKNYVEVTRKWYAEAMPFPLNFFLPGRMQRQYMERLQLLCGEHKSENEEELEKELYQEARECLTLLSQRLGSQKFFFGDAPASLDAFVFSHLALLLQAKLPSGKLQAHLRGLHNLCAYCTHILNLYFPRDGDEVPLPRQTPAAPETEEEPYRRRTQILSVLAGLAAMVGYALLSGIVSIQRTSPARAPGTRALGLAEEDEED" ; affx:hasCds [affx:startsAt "90041572" ; affx:stopsAt "90046259" ]; affx:hasExon [ affx:relatesToExon :Mtx_e1; affx:cdsType "Partial" ; affx:cdsStart "90041572" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Mtx_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Mtx_e3; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Mtx_e4; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Mtx_e5; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Mtx_e6; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Mtx_e7; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Mtx_e8; affx:cdsType "Partial" ; affx:cdsStop "90046259" ; affx:frame "2"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "272" ; affx:stopsAt "294" ; affx:spannedBy [ affx:startsAt "90041644" ; affx:stopsAt "90041710" ; affx:inFrame "1" ] ; ] ; ] ; . :Mtx_e1 a affx:Exon ; affx:startsAt "90041454" ; affx:stopsAt "90041787" ; affx:commonToAll "1" . :Mtx_e2 a affx:Exon ; affx:startsAt "90041870" ; affx:stopsAt "90042025" ; affx:commonToAll "1" . :Mtx_e3 a affx:Exon ; affx:startsAt "90042472" ; affx:stopsAt "90042549" ; affx:commonToAll "1" . :Mtx_e4 a affx:Exon ; affx:startsAt "90042631" ; affx:stopsAt "90042814" ; affx:commonToAll "1" . :Mtx_e5 a affx:Exon ; affx:startsAt "90042949" ; affx:stopsAt "90043042" ; affx:commonToAll "1" . :Mtx_e6 a affx:Exon ; affx:startsAt "90045048" ; affx:stopsAt "90045128" ; affx:commonToAll "1" . :Mtx_e7 a affx:Exon ; affx:startsAt "90045242" ; affx:stopsAt "90045312" ; affx:commonToAll "1" . :Mtx_e8 a affx:Exon ; affx:startsAt "90046178" ; affx:stopsAt "90046271" ; affx:commonToAll "1" . :Muc1 a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi199842] . :gi199842 a affx:Transcript ; affx:unigene "iMm.16193" ; affx:translatesTo "MTPGIRAPFFLLLLLASLKGFLALPSEENSVTSSQDTSSSLASTTTPVHSSNSDPATRPPGDSTSSPVQSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSPVVHSGTSSAPATTAPVDSTSSPVVHGGTSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDSTSSPVAHDDTSSPATSLSEDSASSPVAHGGTSSPATSPLRDSTSSPVHSSASIQNIKTTSDLASTPDHNGTSVTTTSSALGSATSPDHSGTSTTTNSSESVLATTPVYSSMPFSTTKVTSGSAIIPDHNGSSVLPTSSVLGSATSLVYNTSAIATTPVSNGTQPSVPSQYPVSPTMATTSSHSTIASSSYYSTVPFSTFSSNSSPQLSVGVSFFFLSFYIQNHPFNSSLEDPSSNYYQELKRNISGLFLQIFNGDFLGISSIKFRSGSVVVESTVVFREGTFSASDVKSQLIQHKKEADDYNLTISEVKVNEMQFPPSAQSRPGVPGWGIALLVLVCILVALAIVYFLALAVCQCRRKSYGQLDIFPTQDTYHPMSEYPTYHTHGRYVPPGSTKRSPYEEVSAGNGRSSLSYTNPAVVTTSANL" ; affx:hasCds [affx:startsAt "90061619" ; affx:stopsAt "90065598" ]; affx:hasExon [ affx:relatesToExon :Muc1_e1; affx:cdsType "Partial" ; affx:cdsStart "90061619" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Muc1_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Muc1_e3; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Muc1_e4; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Muc1_e5; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Muc1_e6; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Muc1_e7; affx:cdsType "Partial" ; affx:cdsStop "90065598" ; affx:frame "0"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "0" ; affx:stopsAt "23" ; affx:spannedBy [ affx:startsAt "90061619" ; affx:stopsAt "90061677" ; affx:inFrame "0" ] ; affx:spannedBy [ affx:startsAt "90062410" ; affx:stopsAt "90062421" ; affx:inFrame "0" ] ; ] ; ] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "535" ; affx:stopsAt "557" ; affx:spannedBy [ affx:startsAt "90064318" ; affx:stopsAt "90064384" ; affx:inFrame "0" ] ; ] ; ] ; . :Muc1_e1 a affx:Exon ; affx:startsAt "90061605" ; affx:stopsAt "90061677" ; affx:commonToAll "1" . :Muc1_e2 a affx:Exon ; affx:startsAt "90062410" ; affx:stopsAt "90063714" ; affx:commonToAll "1" . :Muc1_e3 a affx:Exon ; affx:startsAt "90063812" ; affx:stopsAt "90063865" ; affx:commonToAll "1" . :Muc1_e4 a affx:Exon ; affx:startsAt "90064000" ; affx:stopsAt "90064134" ; affx:commonToAll "1" . :Muc1_e5 a affx:Exon ; affx:startsAt "90064262" ; affx:stopsAt "90064384" ; affx:commonToAll "1" . :Muc1_e6 a affx:Exon ; affx:startsAt "90064465" ; affx:stopsAt "90064615" ; affx:commonToAll "1" . :Muc1_e7 a affx:Exon ; affx:startsAt "90065523" ; affx:stopsAt "90065854" ; affx:commonToAll "1" . :2410004B18Rik a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi13384983] . :gi13384983 a affx:Transcript ; affx:unigene "iMm.25137" ; affx:translatesTo "MAAEEKDPLSYFAAYGSSSSDSSDENSEPEDAGRKEAASAPTTGGRGKQAEKRLPGPDELFRSVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNCVPPPETYTTEKKPPPPELDMAIKWSNIYEDNGDDAPQNAKKARLLPEGEETVESDDDKDERASKIRRVEPGEAAKKKK" ; affx:hasCds [affx:startsAt "146473903" ; affx:stopsAt "146479805" ]; affx:hasExon [ affx:relatesToExon :2410004B18Rik_e1; affx:cdsType "Partial" ; affx:cdsStart "146473903" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2410004B18Rik_e2; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2410004B18Rik_e3; affx:cdsType "Partial" ; affx:cdsStop "146479805" ; affx:frame "1"] ; . :2410004B18Rik_e1 a affx:Exon ; affx:startsAt "146473876" ; affx:stopsAt "146474173" ; affx:commonToAll "1" . :2410004B18Rik_e2 a affx:Exon ; affx:startsAt "146474742" ; affx:stopsAt "146474941" ; affx:commonToAll "1" . :2410004B18Rik_e3 a affx:Exon ; affx:startsAt "146479731" ; affx:stopsAt "146480210" ; affx:commonToAll "1" . :2610040E16Rik a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi13195621] . :gi13195621 a affx:Transcript ; affx:unigene "iMm.24737" ; affx:translatesTo "MKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLPEFPSCRQLKELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLPCSLGNLHLKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTLPSEARVNIHAIATLKLLDYSDKQATLIPDDLFDATKTTLITSINFSKNQLCEIPQRIVELKEMVLDINLSFNKLSFISHELCLLQKLTFLDLRNNFLSSLPEEMSSLTKLQTINLSFNRFKVFPEVLYRISTLEAVLISNNQVGSVDPQKMKLMENLNTLDLQNNDLLQIPPELGNCVQLRTLLLDGNPFRVPRAAILMKGTAAVLEYLRDRIPA" ; affx:hasCds [affx:startsAt "158659107" ; affx:stopsAt "158676808" ]; affx:hasExon [ affx:relatesToExon :2610040E16Rik_e1; affx:cdsType "Partial" ; affx:cdsStart "158659107" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610040E16Rik_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610040E16Rik_e3; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2610040E16Rik_e4; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610040E16Rik_e5; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610040E16Rik_e6; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610040E16Rik_e7; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610040E16Rik_e8; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2610040E16Rik_e9; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610040E16Rik_e10; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610040E16Rik_e11; affx:cdsType "Partial" ; affx:cdsStop "158676808" ; affx:frame "2"] ; . :2610040E16Rik_e1 a affx:Exon ; affx:startsAt "158659019" ; affx:stopsAt "158659114" ; affx:commonToAll "1" . :2610040E16Rik_e2 a affx:Exon ; affx:startsAt "158662286" ; affx:stopsAt "158662429" ; affx:commonToAll "1" . :2610040E16Rik_e3 a affx:Exon ; affx:startsAt "158663353" ; affx:stopsAt "158663526" ; affx:commonToAll "1" . :2610040E16Rik_e4 a affx:Exon ; affx:startsAt "158665170" ; affx:stopsAt "158665258" ; affx:commonToAll "1" . :2610040E16Rik_e5 a affx:Exon ; affx:startsAt "158665375" ; affx:stopsAt "158665421" ; affx:commonToAll "1" . :2610040E16Rik_e6 a affx:Exon ; affx:startsAt "158666307" ; affx:stopsAt "158666416" ; affx:commonToAll "1" . :2610040E16Rik_e7 a affx:Exon ; affx:startsAt "158669259" ; affx:stopsAt "158669367" ; affx:commonToAll "1" . :2610040E16Rik_e8 a affx:Exon ; affx:startsAt "158671827" ; affx:stopsAt "158671938" ; affx:commonToAll "1" . :2610040E16Rik_e9 a affx:Exon ; affx:startsAt "158673238" ; affx:stopsAt "158673316" ; affx:commonToAll "1" . :2610040E16Rik_e10 a affx:Exon ; affx:startsAt "158674273" ; affx:stopsAt "158674459" ; affx:commonToAll "1" . :2610040E16Rik_e11 a affx:Exon ; affx:startsAt "158676702" ; affx:stopsAt "158677680" ; affx:commonToAll "1" . :2510027J23Rik a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi13385101] ; affx:hasVariant [affx:representedBy :gi17105176] . :gi13385101 a affx:Transcript ; affx:unigene "iMm.158117" ; affx:translatesTo "MVEEVRQELSALAAIFCGPNEWEMLSCSDGAQCPPRETQLLQIVGIHHKHLCITSLTTGRCSWLSATWKAVRKCLLRLLKNGSRFQTSAGRSMETFSSNPGRAPTL" ; affx:hasCds [affx:startsAt "121536637" ; affx:stopsAt "121537222" ]; affx:hasExon [ affx:relatesToExon :2510027J23Rik_e4; affx:cdsType "Partial" ; affx:cdsStart "121536637" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2510027J23Rik_e5; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2510027J23Rik_e6; affx:cdsType "Partial" ; affx:cdsStop "121537222" ; affx:frame "0"] ; . :gi17105176 a affx:Transcript ; affx:unigene "iMm.23989" ; affx:translatesTo "MVEEVRQELSALAAIFCGPNEWEMLSCSETDGAVFRIHTTAEGLVGEDVPLELAFHLPVGYPLCLPGISVTSEHLTRAQCVTAKEKLLGEARKLVSEPMVHELVLWIQQNLRLVLSQPETASSHEKCTLPESATGDDGPWMTLLRLDHMRARTKYVKAVEKWASELRLTGRLMFMGKLILILLQGDRSNIKEYLILQKTSKVDVDSSGKKCKEKMISVLSETKVQTEHKRFLAFEVKEYSTLEELQKEFGAAGLGELFSECVLGLVK" ; affx:hasCds [affx:startsAt "121521627" ; affx:stopsAt "121537222" ]; affx:hasExon [ affx:relatesToExon :2510027J23Rik_e1; affx:cdsType "Partial" ; affx:cdsStart "121521627" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2510027J23Rik_e2; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2510027J23Rik_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2510027J23Rik_e6; affx:cdsType "Partial" ; affx:cdsStop "121537222" ; affx:frame "0"] ; . :2510027J23Rik_e1 a affx:Exon ; affx:startsAt "121521304" ; affx:stopsAt "121521742" ; affx:commonToAll "0" . :2510027J23Rik_e2 a affx:Exon ; affx:startsAt "121521840" ; affx:stopsAt "121521956" ; affx:commonToAll "0" . :2510027J23Rik_e3 a affx:Exon ; affx:startsAt "121524207" ; affx:stopsAt "121524695" ; affx:commonToAll "0" . :2510027J23Rik_e4 a affx:Exon ; affx:startsAt "121536528" ; affx:stopsAt "121536728" ; affx:commonToAll "0" . :2510027J23Rik_e5 a affx:Exon ; affx:startsAt "121536820" ; affx:stopsAt "121536965" ; affx:commonToAll "0" . :2510027J23Rik_e6 a affx:Exon ; affx:startsAt "121537137" ; affx:stopsAt "121537240" ; affx:commonToAll "1" . :Gene3951 a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi15277540] . :gi15277540 a affx:Transcript ; affx:unigene "iMm.4316" ; affx:translatesTo "MAATTANPEMTSDVPSLGPTIASGNPGPGIQGGGAVVQRAIKRRSGLDFDDEVEVNTKFLRCDDDQMCNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRVLDLKTGTVKKEGQQSSMRMCMGSRRSFICRMRCGTSSVDPVSMNRLSFLRNRCRNGLGSVKEGEPHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNICQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKTREWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQEPRPTLSNTIPRSQLGPTANLSLEMGTGQLPSRQQQQQHTELDMVPGRDGLASYNHSQVSVQPVASAGSEHSKPLEKSEGLFAQDRDPRFPEIYPSITADQSKGISSSTVPATQQLFSQGSSFPPNPRPAENFRNSGLTPPVTIVQPSSSAGQILAQISRHSNPAQGSAPTWTSSSRPGFAAQQVPTQATAKTRSSQFGVNNFQTSSSFSAMSLPGAPTASSGTAAYPALPNRGSNFPPETGQTTGQFQARTAEGVGVWPQWQGQQPHHRSSSSEQHVQQTQAQAPSQPEVFQEMLSMLGDQSNTYNNEEFPDLTMFPPFSE" ; affx:hasCds [affx:startsAt "95716826" ; affx:stopsAt "95777602" ]; affx:hasExon [ affx:relatesToExon :Gene3951_e1; affx:cdsType "Partial" ; affx:cdsStart "95716826" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e2; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e3; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e4; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e5; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e6; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e7; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e8; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e9; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e10; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e11; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e12; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e13; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e14; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e15; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e16; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e17; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e18; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e19; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e20; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e21; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :Gene3951_e22; affx:cdsType "Partial" ; affx:cdsStop "95777602" ; affx:frame "0"] ; . :Gene3951_e1 a affx:Exon ; affx:startsAt "95716717" ; affx:stopsAt "95716851" ; affx:commonToAll "1" . :Gene3951_e2 a affx:Exon ; affx:startsAt "95730488" ; affx:stopsAt "95730600" ; affx:commonToAll "1" . :Gene3951_e3 a affx:Exon ; affx:startsAt "95734701" ; affx:stopsAt "95734746" ; affx:commonToAll "1" . :Gene3951_e4 a affx:Exon ; affx:startsAt "95742493" ; affx:stopsAt "95742538" ; affx:commonToAll "1" . :Gene3951_e5 a affx:Exon ; affx:startsAt "95748909" ; affx:stopsAt "95748954" ; affx:commonToAll "1" . :Gene3951_e6 a affx:Exon ; affx:startsAt "95752293" ; affx:stopsAt "95752507" ; affx:commonToAll "1" . :Gene3951_e7 a affx:Exon ; affx:startsAt "95756747" ; affx:stopsAt "95756961" ; affx:commonToAll "1" . :Gene3951_e8 a affx:Exon ; affx:startsAt "95758288" ; affx:stopsAt "95758391" ; affx:commonToAll "1" . :Gene3951_e9 a affx:Exon ; affx:startsAt "95762403" ; affx:stopsAt "95762469" ; affx:commonToAll "1" . :Gene3951_e10 a affx:Exon ; affx:startsAt "95762962" ; affx:stopsAt "95763048" ; affx:commonToAll "1" . :Gene3951_e11 a affx:Exon ; affx:startsAt "95765980" ; affx:stopsAt "95766057" ; affx:commonToAll "1" . :Gene3951_e12 a affx:Exon ; affx:startsAt "95767067" ; affx:stopsAt "95767202" ; affx:commonToAll "1" . :Gene3951_e13 a affx:Exon ; affx:startsAt "95769457" ; affx:stopsAt "95769532" ; affx:commonToAll "1" . :Gene3951_e14 a affx:Exon ; affx:startsAt "95770563" ; affx:stopsAt "95770715" ; affx:commonToAll "1" . :Gene3951_e15 a affx:Exon ; affx:startsAt "95771800" ; affx:stopsAt "95771911" ; affx:commonToAll "1" . :Gene3951_e16 a affx:Exon ; affx:startsAt "95772089" ; affx:stopsAt "95772165" ; affx:commonToAll "1" . :Gene3951_e17 a affx:Exon ; affx:startsAt "95772463" ; affx:stopsAt "95772587" ; affx:commonToAll "1" . :Gene3951_e18 a affx:Exon ; affx:startsAt "95772761" ; affx:stopsAt "95772864" ; affx:commonToAll "1" . :Gene3951_e19 a affx:Exon ; affx:startsAt "95773231" ; affx:stopsAt "95773379" ; affx:commonToAll "1" . :Gene3951_e20 a affx:Exon ; affx:startsAt "95775906" ; affx:stopsAt "95776069" ; affx:commonToAll "1" . :Gene3951_e21 a affx:Exon ; affx:startsAt "95776655" ; affx:stopsAt "95776822" ; affx:commonToAll "1" . :Gene3951_e22 a affx:Exon ; affx:startsAt "95777512" ; affx:stopsAt "95777780" ; affx:commonToAll "1" . :2610029K21Rik a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi13385129] ; affx:hasVariant [affx:representedBy :gi18044497] . :gi13385129 a affx:Transcript ; affx:unigene "iMm.46029" ; affx:translatesTo "MSVTPEVKSRGMKFAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATLTSGEEKPDRDLGNCSDVDNHEPTPPKILTDEMLLKACEGRTAHKAARIGITMKAKLARLEAQEQAFLAQLKGSKALGTSQPLTDSEPSQKKKKKRKQKEGEEAATTEKSLGDELLDTRTGASGTAGRRRRGRKPRDRERL" ; affx:hasCds [affx:startsAt "88835562" ; affx:stopsAt "88839602" ]; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e1; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e4; affx:cdsType "Partial" ; affx:cdsStart "88835562" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e5; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e6; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e7; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e8; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e9; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e11; affx:cdsType "Partial" ; affx:cdsStop "88839524" ; affx:frame "1"] ; . :gi18044497 a affx:Transcript ; affx:unigene "iMm.46029" ; affx:translatesTo "MSVTPEVKSRGMKFAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATLTSGEEKPDRDLGNCSDVDNHEPTPPKILTDEMLLKACEGRTAHKAARIGITMKAKLARLEAQEQAFLAQLKGSKALGTSQPLTDSEPSQKKKKKRKQKEGEEAATTEKSLGDELLGHTDRSFRDSKKRGTCGEDLDTQEEEGKDDLTKGERKVRRKDKRKRQQCCEEDLDVSSKDDGGTWVAEDAGERSRQYPKERAKKKKRKRDRGSEVDLS" ; affx:hasCds [affx:startsAt "88835562" ; affx:stopsAt "88840081" ]; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e2; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e3; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e4; affx:cdsType "Partial" ; affx:cdsStart "88835562" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e5; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e6; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e7; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e8; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e9; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e10; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2610029K21Rik_e12; affx:cdsType "Partial" ; affx:cdsStop "88840081" ; affx:frame "2"] ; . :2610029K21Rik_e1 a affx:Exon ; affx:startsAt "88827458" ; affx:stopsAt "88827530" ; affx:commonToAll "0" . :2610029K21Rik_e2 a affx:Exon ; affx:startsAt "88827474" ; affx:stopsAt "88827530" ; affx:commonToAll "0" . :2610029K21Rik_e3 a affx:Exon ; affx:startsAt "88827817" ; affx:stopsAt "88827952" ; affx:commonToAll "0" . :2610029K21Rik_e4 a affx:Exon ; affx:startsAt "88835513" ; affx:stopsAt "88835641" ; affx:commonToAll "1" . :2610029K21Rik_e5 a affx:Exon ; affx:startsAt "88836024" ; affx:stopsAt "88836098" ; affx:commonToAll "1" . :2610029K21Rik_e6 a affx:Exon ; affx:startsAt "88836196" ; affx:stopsAt "88836289" ; affx:commonToAll "1" . :2610029K21Rik_e7 a affx:Exon ; affx:startsAt "88836383" ; affx:stopsAt "88836470" ; affx:commonToAll "1" . :2610029K21Rik_e8 a affx:Exon ; affx:startsAt "88838720" ; affx:stopsAt "88838812" ; affx:commonToAll "1" . :2610029K21Rik_e9 a affx:Exon ; affx:startsAt "88839054" ; affx:stopsAt "88839105" ; affx:commonToAll "1" . :2610029K21Rik_e10 a affx:Exon ; affx:startsAt "88839309" ; affx:stopsAt "88839549" ; affx:commonToAll "0" . :2610029K21Rik_e11 a affx:Exon ; affx:startsAt "88839309" ; affx:stopsAt "88840339" ; affx:commonToAll "0" . :2610029K21Rik_e12 a affx:Exon ; affx:startsAt "88839810" ; affx:stopsAt "88840333" ; affx:commonToAll "0" . :5730470L24Rik a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi13385139] . :gi13385139 a affx:Transcript ; affx:unigene "iMm.40037" ; affx:translatesTo "MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGAVLPEQYQEDASDVKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGAVMRRAVQVDDNQFCKVQERLAQLELENKELRELLSISSESLQVGKESSVAPASQTIK" ; affx:hasCds [affx:startsAt "103104904" ; affx:stopsAt "103110905" ]; affx:hasExon [ affx:relatesToExon :5730470L24Rik_e1; affx:cdsType "Partial" ; affx:cdsStart "103104904" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :5730470L24Rik_e2; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :5730470L24Rik_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :5730470L24Rik_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :5730470L24Rik_e5; affx:cdsType "Partial" ; affx:cdsStop "103110905" ; affx:frame "1"] ; . :5730470L24Rik_e1 a affx:Exon ; affx:startsAt "103104840" ; affx:stopsAt "103105063" ; affx:commonToAll "1" . :5730470L24Rik_e2 a affx:Exon ; affx:startsAt "103105251" ; affx:stopsAt "103105357" ; affx:commonToAll "1" . :5730470L24Rik_e3 a affx:Exon ; affx:startsAt "103106338" ; affx:stopsAt "103106481" ; affx:commonToAll "1" . :5730470L24Rik_e4 a affx:Exon ; affx:startsAt "103107585" ; affx:stopsAt "103107699" ; affx:commonToAll "1" . :5730470L24Rik_e5 a affx:Exon ; affx:startsAt "103110803" ; affx:stopsAt "103112077" ; affx:commonToAll "1" . :4933436O18Rik a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi13385223] ; affx:hasVariant [affx:representedBy :gi18141134] . :gi13385223 a affx:Transcript ; affx:unigene "iMm.116960" ; affx:translatesTo "MNNSSKLCRKTSFPRSNIFCNLVDKIVKRPSLQFLGQWGYHCYEPRIYRTLAKILRYVDLDGFDILLTDYIAFVEKSGHRFELNFNLEFTEICVNTILYWVFARKGNPDFVELLLKKTKDYVQDRSCSLALIWR" ; affx:hasCds [affx:startsAt "154421227" ; affx:stopsAt "154421632" ]; affx:hasExon [ affx:relatesToExon :4933436O18Rik_e2; affx:cdsType "Partial" ; affx:cdsStart "154421227" ; affx:cdsStop "154421632" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :4933436O18Rik_e3; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :4933436O18Rik_e4; affx:cdsType "None" ] ; . :gi18141134 a affx:Transcript ; affx:unigene "iMm.116960" ; affx:translatesTo "MNNSSKLCRKTSFPRSNIFCNLVDKIVKRPSLQFLGQWGYHCYEPRIYRTLAKILRYVDLDGFDILLTDYIAFVEKSGHRFELNFNLEFTEICVNTILYWVFARKGNPDFVELLLKKTKDYVQDRSCSLALIWRTFTPVYCPSPLSGITPLLYVAQTRQSNILKILLQYGILEREKNPINIVLTILLYPSRVRIMVDHELIDIQEDAKTCLMLCSRVLSTISVREIETQLSLGRRPIIQNWLDYIPPTRYKDPCELVHLCRITIRTQLLANNMLPNGIFSLLIPTRLQNFLNLES" ; affx:hasCds [affx:startsAt "154421227" ; affx:stopsAt "154430436" ]; affx:hasExon [ affx:relatesToExon :4933436O18Rik_e1; affx:cdsType "Partial" ; affx:cdsStart "154421227" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :4933436O18Rik_e3; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :4933436O18Rik_e5; affx:cdsType "Partial" ; affx:cdsStop "154430436" ; affx:frame "2"] ; . :4933436O18Rik_e1 a affx:Exon ; affx:startsAt "154421141" ; affx:stopsAt "154421628" ; affx:commonToAll "0" . :4933436O18Rik_e2 a affx:Exon ; affx:startsAt "154421160" ; affx:stopsAt "154421655" ; affx:commonToAll "0" . :4933436O18Rik_e3 a affx:Exon ; affx:startsAt "154427553" ; affx:stopsAt "154427833" ; affx:commonToAll "1" . :4933436O18Rik_e4 a affx:Exon ; affx:startsAt "154430229" ; affx:stopsAt "154430506" ; affx:commonToAll "0" . :4933436O18Rik_e5 a affx:Exon ; affx:startsAt "154430229" ; affx:stopsAt "154430510" ; affx:commonToAll "0" . :2600009M07Rik a affx:Gene ; affx:strand "-" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi13385419] ; affx:hasVariant [affx:representedBy :gi15148508] . :gi13385419 a affx:Transcript ; affx:unigene "iMm.36715" ; affx:translatesTo "MAEVSRDSEAAERGPEGSSPEAVPGDATIPRVKLLDAIVDTFLQKLVADRSYERFTTCYKHFHQLNPEVTQRIYDKFVAQLQTSIREEISEIKEEGNLEAVLNSLDKIIEEGRERGEPAWRPSGIPEKDLCSVMAPYFLKQQDTLCHQVRKQEAKNQELADAVLAGRRQVEELQQQVRALQQTWQALHREQRELLSVLRAPE" ; affx:hasCds [affx:startsAt "89187414" ; affx:stopsAt "89203208" ]; affx:hasExon [ affx:relatesToExon :2600009M07Rik_e1; affx:cdsType "Partial" ; affx:cdsStart "89187414" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2600009M07Rik_e2; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2600009M07Rik_e3; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :2600009M07Rik_e4; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2600009M07Rik_e5; affx:cdsType "Partial" ; affx:cdsStop "89203208" ; affx:frame "1"] ; . :gi15148508 a affx:Transcript ; affx:unigene "iMm.36715" ; affx:translatesTo "MAEVSRDSEAAERGPEGSSPEAVPGDATIPRVKLLDAIVDTFLQKLVADRRRPSGIPEKDLCSVMAPYFLKQQDTLCHQVRKQEAKNQELADAVLAGRRQVEELQQQVRALQQTWQALHREQRELLSVLRAPE" ; affx:hasCds [affx:startsAt "89187414" ; affx:stopsAt "89203208" ]; affx:hasExon [ affx:relatesToExon :2600009M07Rik_e1; affx:cdsType "Partial" ; affx:cdsStart "89187414" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :2600009M07Rik_e2; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :2600009M07Rik_e6; affx:cdsType "Partial" ; affx:cdsStop "89203208" ; affx:frame "1"] ; . :2600009M07Rik_e1 a affx:Exon ; affx:startsAt "89187040" ; affx:stopsAt "89187468" ; affx:commonToAll "1" . :2600009M07Rik_e2 a affx:Exon ; affx:startsAt "89188802" ; affx:stopsAt "89188998" ; affx:commonToAll "1" . :2600009M07Rik_e3 a affx:Exon ; affx:startsAt "89192032" ; affx:stopsAt "89192133" ; affx:commonToAll "0" . :2600009M07Rik_e4 a affx:Exon ; affx:startsAt "89192608" ; affx:stopsAt "89192714" ; affx:commonToAll "0" . :2600009M07Rik_e5 a affx:Exon ; affx:startsAt "89203056" ; affx:stopsAt "89203217" ; affx:commonToAll "0" . :2600009M07Rik_e6 a affx:Exon ; affx:startsAt "89203056" ; affx:stopsAt "89203227" ; affx:commonToAll "0" . :NCU-G1 a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi7242875] . :gi7242875 a affx:Transcript ; affx:unigene "iMm.21976" ; affx:translatesTo "MFRCWGPHWGWVPCAPTPWLLLSLLVCSAPFGLQGEETRQVSMEVISGWPNPQNLLHIRAVGSNSTLHYVWSSLGPPAVVLVATNTTQSVLSVNWSLLLSPDPAGALMVLPKSSIQFSSALVFTRLLEFDSTNASEGAQPPGKPYPPYSLAKFSWNNITNSLDLANLSADFQGRPVDDPTGAFANGSLTFKVQAFSRSGRPAQPPRLLHTADVCQLEVALVGASPRGNHSLFGLEVATLGQGPDCPSVNERNSIDDEYAPAVFQLNQLLWGSSPSGFMQWRPVAFSEEERARESALPCQASTLHSTLASSLPHSPIVQAFFGSQNNFCAFNLTFGAPTGPGYWDQYYLCWSMLLGMGFPPVDIFSPLVLGIMAVALGAPGLMFLGGGLFLLLRHRRYSEYQSIN" ; affx:hasCds [affx:startsAt "89112847" ; affx:stopsAt "89116134" ]; affx:hasExon [ affx:relatesToExon :NCU-G1_e1; affx:cdsType "Partial" ; affx:cdsStart "89112847" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :NCU-G1_e2; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :NCU-G1_e3; affx:cdsType "Full" ; affx:frame "2"] ; affx:hasExon [ affx:relatesToExon :NCU-G1_e4; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :NCU-G1_e5; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :NCU-G1_e6; affx:cdsType "Partial" ; affx:cdsStop "89116134" ; affx:frame "0"] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "0" ; affx:stopsAt "35" ; affx:spannedBy [ affx:startsAt "89112847" ; affx:stopsAt "89112952" ; affx:inFrame "0" ] ; ] ; ] ; affx:tmHMMHit [ affx:commonToAll "1" ; affx:motifCount "1" ; affx:containsMotif [ affx:startsAt "370" ; affx:stopsAt "392" ; affx:spannedBy [ affx:startsAt "89116029" ; affx:stopsAt "89116095" ; affx:inFrame "0" ] ; ] ; ] ; . :NCU-G1_e1 a affx:Exon ; affx:startsAt "89112832" ; affx:stopsAt "89112967" ; affx:commonToAll "1" . :NCU-G1_e2 a affx:Exon ; affx:startsAt "89113442" ; affx:stopsAt "89113697" ; affx:commonToAll "1" . :NCU-G1_e3 a affx:Exon ; affx:startsAt "89113880" ; affx:stopsAt "89114078" ; affx:commonToAll "1" . :NCU-G1_e4 a affx:Exon ; affx:startsAt "89114176" ; affx:stopsAt "89114395" ; affx:commonToAll "1" . :NCU-G1_e5 a affx:Exon ; affx:startsAt "89115622" ; affx:stopsAt "89115879" ; affx:commonToAll "1" . :NCU-G1_e6 a affx:Exon ; affx:startsAt "89115968" ; affx:stopsAt "89116397" ; affx:commonToAll "1" . :1100001F19Rik a affx:Gene ; affx:strand "+" ; affx:chr "chr3" ; affx:hasVariant [affx:representedBy :gi13384717] . :gi13384717 a affx:Transcript ; affx:unigene "iMm.24529" ; affx:translatesTo "MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM" ; affx:hasCds [affx:startsAt "135922209" ; affx:stopsAt "135947675" ]; affx:hasExon [ affx:relatesToExon :1100001F19Rik_e1; affx:cdsType "None" ] ; affx:hasExon [ affx:relatesToExon :1100001F19Rik_e2; affx:cdsType "Partial" ; affx:cdsStart "135922209" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :1100001F19Rik_e3; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :1100001F19Rik_e4; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :1100001F19Rik_e5; affx:cdsType "Full" ; affx:frame "0"] ; affx:hasExon [ affx:relatesToExon :1100001F19Rik_e6; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :1100001F19Rik_e7; affx:cdsType "Full" ; affx:frame "1"] ; affx:hasExon [ affx:relatesToExon :1100001F19Rik_e8; affx:cdsType "Partial" ; affx:cdsStop "135947675" ; affx:frame "1"] ; . :1100001F19Rik_e1 a affx:Exon ; affx:startsAt "135921229" ; affx:stopsAt "135921335" ; affx:commonToAll "1" . :1100001F19Rik_e2 a affx:Exon ; affx:startsAt "135922078" ; affx:stopsAt "135922233" ; affx:commonToAll "1" . :1100001F19Rik_e3 a affx:Exon ; affx:startsAt "135937620" ; affx:stopsAt