The Axiom Genotyping Solution
The Axiom Genotyping Solution is Affymetrix' newest product for genome-wide association studies (GWAS) and candidate gene association studies.
The Axiom Genotyping Solution is Affymetrix' newest product for genome-wide association studies (GWAS) and candidate gene association studies. It includes array plates with validated genomic content, complete reagent kits, data analysis tools, and a fully automated workflow utilizing the GeneTitan Multi-Channel Instrument.
Benefits of the Axiom Genotyping Solution
- Flexible content - optimize your studies with a diverse set of relevant and novel variants
- Fast results - process more than 750 samples per week on a single platform—the highest throughput in the industry
- More power - run more samples within your budget
- Greater confidence - generate reliable results with end-to-end automated sample processing and fully optimized reagent kits
The Axiom Genotyping Solution includes:
- Axiom Genome-Wide Human Array Plates, designed to maximize genomic coverage of common and novel SNP and indels in Caucasian, Asian, and African populations
- A proprietary database of validated genomic markers, including HapMap and content from the 1000 Genomes Project, that can be leveraged as part of a custom Axiom design process
- *Axiom Reagent Kits for automated, parallel processing of 96 samples per plate—process between 192 and 768 samples per run
- A fully automated workflow with validated robotic methods for target preparation and array processing, based on the Beckman Biomek® FXP Target Prep Express System and the GeneTitan MC Instrument
- Genotyping Console Software (GTC) with a new Axiom Genotyping Algorithm v1 (Axiom GT1) for automated allele calling and quality assessment of called genotypes
*Reagent kits do not include plastic consumables required to run the assay on the Beckman Biomek® FXP Target Prep Express System. For a list of required Beckman consumables, please see the Axiom User Guide.
A streamlined assay
Total genomic DNA (200 ng) is amplified and randomly fragmented into 25 to 125 base pair (bp) fragments. These fragments are purified, re-suspended, and hybridized to Axiom Genome-Wide Human Array Plates. Following hybridization, the bound target is washed under stringent conditions to remove non-specific background to minimize background noise caused by random ligation events. Each polymorphic nucleotide is queried via a multi-color ligation event carried out on the array surface. After ligation, the arrays are stained and imaged on the GeneTitan Multi-Channel Instrument.
Overview of the Axiom Genome-Wide Genotyping Assay
For research use only. Not for use in diagnostic procedures.

Data Sheets
Axiom Genotyping Solution (pdf, 192 KB)
Library Files
Axiom™ Genotyping Solution (zip 86MB)
Manuals
Axiom™ Genome-Wide Human Assay, User Manual (pdf, 4.32 MB)
Axiom™ Genome-Wide Human Assay, Site Prep Guide (pdf, 415 KB)
Package Inserts
Axiom™ Genome-Wide Human Reagent Kit (pdf, 46 KB)
Axiom™ Genome-Wide Human Array Plate (pdf, 56 KB)
Safety Data Sheets
Axiom™ Genotyping Solution (zip, 491 KB)
Other
NetAffx Alignment Files
Axiom_GW_Hu_SNP.r2 BED File (8 MB 10/23/09)
NetAffx Annotation Files
Axiom_GW_Hu_SNP.r2 Annotations, CSV format, Release 30 (131 MB 11/19/09)
Axiom_GW_Hu_SNP.r2 Annotations, SQLite Format, Release 30 (166 MB 11/18/09)
Sequence Files
Axiom_GW_Hu_SNP.r2 Probe Sequences, tabular format (8 MB 10/23/09)
Archived NetAffx Annotation Files
Axiom_GW_Hu_SNP.r2 Annotations, CSV format, Release 29 (112 MB 10/23/09)
Axiom_GW_Hu_SNP.r2 Annotations, SQLite Format, Release 29 (144 MB 10/23/09)

Required Products
| Genotyping Console Software |
| GeneChip Command Console Software (AGCC) |
| GeneTitan family of instruments |
Related Products
| Whole-Genome Services |




