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GeneChip Sugar Cane Genome Array
GeneChip Sugar Cane Genome Array
The GeneChip Sugar Cane Genome Array is designed specifically to monitor gene expression in the sugar cane plant (Saccharum officinarum).
The GeneChip® Sugar Cane Genome Array is designed specifically to monitor gene expression in the sugar cane plant (Saccharum officinarum), which is an important food crop worldwide.
The array, through study of gene expression patterns of S. officinarum, will enable researchers to elucidate complex genetic traits which may lead to improved crop production and resistance to insects and disease.
- The Sugar Cane Genome Array contains 8,236 S. officinarum probe sets to monitor gene expression for approximately 6,024 distinct S. officinarum genes (including both UniGene and non-UniGene gene clusters).
- Multiple independent measurements for each transcript deliver the greatest accuracy and reproducibility of any microarray platform.
- GeneChip® System: richer data, sharper insights, better decisions.
Array Profile
The sequence information for this array was created in collaboration with leading sugar cane researchers through the Affymetrix® GeneChip® Consortia Program and was designed based on content from Saccharum officinarum UniGene Build 5 from August 27th, 2004 and GenBank® mRNAs up to November 2, 2004. The array contains 11 probe pairs per probe set and is a 169-format, 11-micron array design.
Instrument Software Requirements
- GeneChip® Scanner 3000, enabled for High-Resolution Scanning* or GeneChip® Scanner 3000 7G
- GeneChip® Operating Software (GCOS) v1.1.1, which contains the High-Resolution Scanning Update
*GeneChip Scanner 3000 High-Resolution Update is standard on all instruments shipped starting in September 2003 with serial number series 502. Previous versions (serial number series 501) will require the 00-0110 GeneChip Scanner 3000 High-Resolution Update to be installed.
For research use only. Not for use in diagnostic procedures.
Data Sheets
Sugar Cane Genome Array (pdf, 84KB)
Library Files
Sugar Cane Genome Array (zip, 6 MB)
Manuals
Probe Set Data in MAGE-ML Format
HT 3' IVT Express Kit (pdf 5.93 MB)
3' IVT Express Kit User Manual (pdf, 1.6 MB)
Package Inserts
Sugar Cane Genome Array (pdf, 492 KB)
Protocol, Long
Other
NetAffx Annotation Files
Sugar_Cane Annotations, CSV format, Release 30 (2 MB 11/15/09)
Sugar_Cane Annotations, MAGE-ML XML Format, Release 30 (7 MB 11/15/09)
Sugar_Cane BLASTP annotations, CSV Format, Release 30 (3 KB 11/16/09)
Sequence Files
Sugar_Cane Consensus Sequences, FASTA (2 MB 08/20/08)
Sugar_Cane Control Sequences, FASTA (57 KB 06/21/05)
Sugar_Cane Probe Sequences, FASTA (2 MB 08/20/08)
Sugar_Cane Probe Sequences, Tabular (2 MB 08/20/08)
Sugar_Cane Taget Sequences, FASTA (1 MB 08/20/08)
Archived NetAffx Annotation Files
Sugar_Cane Annotations, MAGE-ML XML, Release 20 (7 MB 06/15/07)
Sugar_Cane Annotations, CSV, Release 20 (2 MB 05/31/07)
Sugar_Cane Annotations, BLASTP, Release 20 (4 KB 07/14/06)
Sugar_Cane Annotations, CSV format, Release 21 (2 MB 05/31/07)
Sugar_Cane Annotations, MAGE-ML XML format, Release 21 (7 MB 06/15/07)
Sugar_Cane BLASTP annotations, CSV format, Release 21 (4 KB 11/15/06)
Sugar_Cane Annotations, CSV format, Release 22 (2 MB 05/31/07)
Sugar_Cane Annotations, MAGE-ML XML Format, Release 22 (7 MB 06/15/07)
Sugar_Cane BLASTP annotations, CSV Format, Release 22 (4 KB 03/09/07)
Sugar_Cane Annotations, CSV format, Release 23 (2 MB 07/12/07)
Sugar_Cane Annotations, MAGE-ML XML Format, Release 23 (7 MB 07/12/07)
Sugar_Cane BLASTP annotations, CSV Format, Release 23 (4 KB 07/12/07)
Sugar_Cane Annotations, CSV format, Release 24 (2 MB 11/06/07)
Sugar_Cane Annotations, MAGE-ML XML Format, Release 24 (7 MB 11/06/07)
Sugar_Cane BLASTP annotations, CSV Format, Release 24 (1 KB 11/06/07)
Sugar_Cane Annotations, CSV format, Release 25 (2 MB 03/18/08)
Sugar_Cane Annotations, MAGE-ML XML Format, Release 25 (7 MB 03/18/08)
Sugar_Cane Annotations, CSV format, Release 26 (2 MB 07/08/08)
Sugar_Cane Annotations, MAGE-ML XML Format, Release 26 (7 MB 07/08/08)
Sugar_Cane BLASTP annotations, CSV Format, Release 26 (1 KB 07/08/08)
Sugar_Cane Annotations, CSV format, Release 27 (2 MB 11/30/08)
Sugar_Cane Annotations, MAGE-ML XML Format, Release 27 (7 MB 11/24/08)
Sugar_Cane Annotations, CSV format, Release 28 (2 MB 03/12/09)
Sugar_Cane Annotations, MAGE-ML XML Format, Release 28 (7 MB 03/12/09)
Sugar_Cane Annotations, CSV format, Release 29 (2 MB 07/01/09)
Sugar_Cane Annotations, MAGE-ML XML Format, Release 29 (7 MB 07/01/09)
Sugar_Cane BLASTP annotations, CSV Format, Release 28 (1 KB 03/04/09)
Required Products