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GeneChip Rice Genome Array
GeneChip Rice Genome Array
The GeneChip Rice Genome Array offers researchers comprehensive transcriptome coverage for rice gene expression research.
The GeneChip® Rice Genome Array offers researchers comprehensive transcriptome coverage for rice gene expression research. This array contains probes to query 51,279 transcripts representing two rice cultivars, with approximately 48,564 japonica transcripts and 1,260 transcripts representing the indica cultivar. This unique design was created within the Affymetrix GeneChip® Consortia Program and provides scientists with a single array that can be used for the study of rice. High-quality sequence data were derived from GenBank® mRNAs, TIGR gene predictions, and the International Rice Genome sequencing project. The arrays were designed using NCBI UniGene Build #52, (May 7, 2004) incorporating predicted genes from GenBank® and the TIGR Os1 v2 data set. (ftp.tigr.org FASTA, 89.3 MB).
Instrument and Software Requirements
- GeneChip® Scanner 3000, enabled for High-Resolution Scanning*
- GeneChip® Operating Software (GCOS) v1.1.1 or higher, which includes the GeneChip Scanner 3000 High-Resolution Scanning Patch
*GeneChip Scanner 3000 High-Resolution Update is standard on all instruments shipped starting in September 2003 with serial number series 502. Previous versions, serial number series 501, will require the 00-0110 GeneChip Scanner 3000 High-Resolution Update to be installed.
For research use only. Not for use in diagnostic procedures.
Data Sheets
Rice Genome Array (pdf, 84 KB)
Library Files
Rice Genome Array (zip, 29 MB)
Manuals
HT 3' IVT Express Kit (pdf 5.93 MB)
3' IVT Express Kit User Manual (pdf, 1.6 MB)
Probe Set Data in MAGE-ML Format
Package Inserts
Rice Genome Array (pdf, 492 KB)
Protocol, Long
Other
NetAffx Alignment Files
Rice Alignments To Genome, PSL Format (6 MB 11/17/06)
NetAffx Annotation Files
Rice Annotations, CSV format, Release 30 (8 MB 11/15/09)
Rice Annotations, MAGE-ML XML Format, Release 30 (58 MB 11/15/09)
Rice BLASTP annotations, CSV Format, Release 30 (4 MB 11/16/09)
Rice Orthologs/Homologs, CSV Format, Release 30 (350 KB 11/15/09)
Sequence Files
Rice Consensus Sequences, FASTA (25 MB 08/20/08)
Rice Control Sequences, FASTA (66 KB 12/01/04)
Rice Probe Sequences, FASTA (12 MB 08/20/08)
Rice Probe Sequences, Tabular (11 MB 08/20/08)
Rice Target Sequences, FASTA (8 MB 08/20/08)
Archived NetAffx Annotation Files
Rice Annotations, MAGE-ML XML, Release 20 (51 MB 06/15/07)
Rice Annotations, CSV, Release 20 (6 MB 05/31/07)
Rice Annotations, CSV format, Release 21 (7 MB 05/31/07)
Rice Annotations, MAGE-ML XML format, Release 21 (50 MB 06/15/07)
Rice BLASTP annotations, CSV format, Release 21 (156 KB 11/15/06)
Rice Orthologs/Homologs, CSV format, Release 21 (251 KB 11/30/06)
Rice Annotations, CSV format, Release 22 (6 MB 05/31/07)
Rice Annotations, MAGE-ML XML Format, Release 22 (49 MB 06/15/07)
Rice BLASTP annotations, CSV Format, Release 22 (76 KB 03/09/07)
Rice Annotations, CSV format, Release 23 (6 MB 07/12/07)
Rice Annotations, MAGE-ML XML Format, Release 23 (49 MB 07/12/07)
Rice BLASTP annotations, CSV Format, Release 23 (76 KB 07/12/07)
Rice Orthologs/Homologs, CSV Format, Release 23 (185 KB 07/12/07)
Rice Annotations, CSV format, Release 24 (6 MB 11/06/07)
Rice Annotations, MAGE-ML XML Format, Release 24 (55 MB 11/06/07)
Rice BLASTP annotations, CSV Format, Release 24 (4 MB 11/06/07)
Rice Orthologs/Homologs, CSV Format, Release 24 (186 KB 11/06/07)
Rice Annotations, CSV format, Release 25 (6 MB 03/18/08)
Rice Annotations, MAGE-ML XML Format, Release 25 (56 MB 03/18/08)
Rice BLASTP annotations, CSV Format, Release 25 (4 MB 03/18/08)
Rice Orthologs/Homologs, CSV Format, Release 25 (194 KB 03/18/08)
Rice Annotations, CSV format, Release 26 (7 MB 07/08/08)
Rice Annotations, MAGE-ML XML Format, Release 26 (57 MB 07/08/08)
Rice BLASTP annotations, CSV Format, Release 26 (4 MB 07/08/08)
Rice Orthologs/Homologs, CSV Format, Release 26 (256 KB 07/08/08)
Rice Annotations, CSV format, Release 27 (8 MB 11/30/08)
Rice Annotations, MAGE-ML XML Format, Release 27 (58 MB 11/24/08)
Rice BLASTP annotations, CSV Format, Release 27 (4 MB 11/24/08)
Rice Orthologs/Homologs, CSV Format, Release 27 (271 KB 11/24/08)
Rice Annotations, CSV format, Release 28 (8 MB 03/12/09)
Rice Annotations, MAGE-ML XML Format, Release 28 (58 MB 03/12/09)
Rice BLASTP annotations, CSV Format, Release 28 (4 MB 03/04/09)
Rice Orthologs/Homologs, CSV Format, Release 28 (301 KB 03/12/09)
Rice Annotations, CSV format, Release 29 (8 MB 07/01/09)
Rice Annotations, MAGE-ML XML Format, Release 29 (58 MB 07/01/09)
Rice BLASTP annotations, CSV Format, Release 29 (4 MB 07/01/09)
Rice Orthologs/Homologs, CSV Format, Release 29 (312 KB 07/01/09)
Required Products