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GeneChip Rat ToxFX 1.0 Array

The GeneChip® Rat ToxFX 1.0 Array consists of a single array containing 2,073 probes sets that represent 55 signatures and 22 pathways of direct toxicological interest.

Part # Description Unit Size Your Price (USD)
Qty
900994
GeneChip Rat ToxFX 1.0 Array
contains 2 arrays    Please Inquire
900995
GeneChip Rat ToxFX 1.0 Array
contains 6 arrays    Please Inquire
900996
GeneChip Rat ToxFX 1.0 Array
contains 30 arrays    Please Inquire
900997
GeneChip Rat ToxFX 1.0 Array with Reagents
*Contains 30 Arrays and GeneChip® One-Cycle Target Labeling and Control Reagents sufficient for 30 reactions.    Please Inquire
     

The GeneChip® Rat ToxFX 1.0 Array consists of a single array containing 2,073 probes sets that represent 55 signatures and 22 pathways of direct toxicological interest. Analysis of the microarray data is fully automated through the ToxFX™ Study Builder software and ToxFX™ Analysis Engine, providing exhaustive documentation of the toxicological and pharmacological profile of the drug candidate or compound of interest in an easy-to-read report. ToxFx 1.0 comes with a ToxFX Certificate of Analysis that allows you to generate a full toxicology report.

For more information, please visit www.toxfx.com.

*The GeneChip® Hybridization, Wash and Stain Kit is not included and must be purchased separately.

Rat ToxFX 1.0 Array

Figure 3, Table 1

The Rat ToxFX 1.0 Array comprises a focused subset of content present on the whole-genome Rat Genome 230 2.0 Array; the subset of probes represent genes associated with Drug Signatures® and pathways present in Entelos' DrugMatrix® library (previously Iconix Biosciences).

All probe sets on the Rat ToxFX 1.0 Array are identical to their counterparts on the Rat Genome 230 2.0 Array; the focused array also includes the same hybridization, sample labeling and housekeeping controls. For a full comparison of features, please refer to the Rat ToxFX 1.0 datasheet or view, Figure 3 and Table 1.

Eleven pairs of oligonucleotide probes are used to measure the level of transcription of each gene sequence interrogated by the Rat ToxFX 1.0 Array. The oligonucleotide probes are synthesized in situ using Affymetrix' photolithograthic process, in an identical manufacturing process as the GeneChip® Rat Genome 230 2.0 Array.

ToxFX™ Report

The ToxFX Report is automatically generated as a PDF document and provides an in-depth summary of all aspects of the toxicology study and its results. Data are summarized at a variety of levels, from executive summary to in depth pathway analysis. For more information, please visit www.toxfx.com.

To request a sample ToxFX report, please contact us.

Sections of the report include:

  • Executive Summary — Single-page summary highlighting key safety issues
  • Study Description — Detailed record of study design
  • Drug Signatures — Report on potential safety liabilities based on toxicological matches correlating with more than 50 biological endpoints (e.g., cholestasis, hepatic duct hyperplasia)
  • Pathways — Detailed analysis and diagrams indicating treatment impact on 22 molecular pathways of key toxicological interest (e.g., bile acid and cholesterol metabolism or oxidative stress)
  • Toxicologically Relevant Gene Groupings — A single table comprising expression data from noteworthy genes of toxicological interest (e.g., cytochrome P450)
  • Methodology and Glossary — Documentation of the analytical approaches and terms required to interpret results

For research use only. Not for use in diagnostic procedures.

 

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Data Sheets

ToxFX Analysis Suite (pdf, 234 KB)

FAQs

Rat ToxFX 1.0 Array

Gene Expression Assay and Data Analysis

Gene Expression Arrays

Library Files

Rat ToxFX 1.0 Array (zip, 3.26 MB)

ToxFX Gene List (zip, 170KB)

Manuals

3' IVT Express Kit User Manual (pdf, 1.6 MB)

Probe Set Data in MAGE-ML Format

HT 3' IVT Express Kit (pdf 5.93 MB)

ToxFX Analysis Suite Manual (pdf, 1.0 MB)

Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (pdf, 1.70 MB)

Package Inserts

Rat ToxFX 1.0 Array (pdf, 212 KB)

NetAffx Annotation Files

RatToxFX Annotations, CSV format, Release 30 (935 KB 11/15/09)

RatToxFX Annotations, MAGE-ML XML Format, Release 30 (4 MB 11/15/09)

RatToxFX Orthologs/Homologs, CSV Format, Release 30 (589 KB 11/15/09)

RatToxFX BLASTP annotations, CSV Format, Release 30 (2 KB 11/16/09)

Sequence Files

RatToxFX Target Sequences FASTA Format (480 KB 11/09/06)

RatToxFX Probe Sequences, tabular format (407 KB 11/09/06)

RatToxFX Probe Sequences, FASTA format (446 KB 11/09/06)

RatToxFX Control Sequences FASTA Format (31 KB 11/09/06)

RatToxFX Consensus Sequences FASTA Format (1 MB 11/09/06)

Archived NetAffx Annotation Files

RatToxFX Annotations, CSV format, Release 21 (770 KB 05/31/07)

RatToxFX Annotations, MAGE-ML XML format, Release 21 (4 MB 06/15/07)

RatToxFX BLASTP annotations, CSV format, Release 21 (277 KB 11/15/06)

RatToxFX Orthologs/Homologs, CSV format, Release 21 (497 KB 11/30/06)

RatToxFX Annotations, CSV format, Release 22 (827 KB 05/31/07)

RatToxFX Annotations, MAGE-ML XML Format, Release 22 (4 MB 06/15/07)

RatToxFX BLASTP annotations, CSV Format, Release 22 (6 KB 03/09/07)

RatToxFX Orthologs/Homologs, CSV Format, Release 22 (542 KB 03/09/07)

RatToxFX Annotations, CSV format, Release 23 (801 KB 07/12/07)

RatToxFX Annotations, MAGE-ML XML Format, Release 23 (4 MB 07/12/07)

RatToxFX BLASTP annotations, CSV Format, Release 23 (7 KB 07/12/07)

RatToxFX Orthologs/Homologs, CSV Format, Release 23 (506 KB 07/12/07)

RatToxFX Annotations, CSV format, Release 24 (795 KB 11/06/07)

RatToxFX Annotations, MAGE-ML XML Format, Release 24 (4 MB 11/06/07)

RatToxFX BLASTP annotations, CSV Format, Release 24 (1 KB 11/06/07)

RatToxFX Orthologs/Homologs, CSV Format, Release 24 (467 KB 11/06/07)

RatToxFX Annotations, CSV format, Release 25 (795 KB 03/18/08)

RatToxFX Annotations, MAGE-ML XML Format, Release 25 (4 MB 03/18/08)

RatToxFX Orthologs/Homologs, CSV Format, Release 25 (473 KB 03/18/08)

RatToxFX Annotations, CSV format, Release 26 (839 KB 07/08/08)

RatToxFX Annotations, MAGE-ML XML Format, Release 26 (4 MB 07/08/08)

RatToxFX BLASTP annotations, CSV Format, Release 26 (1 KB 07/08/08)

RatToxFX Orthologs/Homologs, CSV Format, Release 26 (514 KB 07/08/08)

RatToxFX Annotations, CSV format, Release 27 (852 KB 11/30/08)

RatToxFX Annotations, MAGE-ML XML Format, Release 27 (4 MB 11/24/08)

RatToxFX BLASTP annotations, CSV Format, Release 27 (4 KB 11/24/08)

RatToxFX Orthologs/Homologs, CSV Format, Release 27 (531 KB 11/24/08)

RatToxFX Annotations, CSV format, Release 28 (852 KB 03/12/09)

RatToxFX Annotations, MAGE-ML XML Format, Release 28 (4 MB 03/12/09)

RatToxFX Orthologs/Homologs, CSV Format, Release 28 (573 KB 03/12/09)

RatToxFX Annotations, CSV format, Release 29 (897 KB 07/01/09)

RatToxFX Annotations, MAGE-ML XML Format, Release 29 (4 MB 07/01/09)

RatToxFX Orthologs/Homologs, CSV Format, Release 29 (560 KB 07/01/09)

RatToxFX BLASTP annotations, CSV Format, Release 29 (2 KB 07/01/09)

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