GeneChip Medicago Genome Array
The GeneChip Medicago Genome Array is designed specifically to monitor gene expression in Medicago truncatula, Medicago sativa, and the symbiotic organism Sinorhizobium meliloti.
The GeneChip® Medicago Genome Array is designed specifically to monitor gene expression in Medicago truncatula, Medicago sativa, and the symbiotic organism Sinorhizobium meliloti. The Medicago Genome Array is particularly useful for agriculture researchers studying legume genomics and symbiotic relationships between nitrogen fixing bacteria and plants.
Sequence information for this array was selected from data sources including the TIGR M. truncatula gene index (The Institute for Genomic Research, January 2005), gene predictions from the International Medicago Genome Annotation Group (IMGAG), gene predictions from the S. meliloti genome, and M. sativa EST information made available by TIGR. The array contains over 61,200 probe sets: 32,167 M. truncatula EST/mRNA-based and chloroplast gene-based probe sets; 18,733 M. truncatula IMGAG and phase 2/3 BAC prediction-based probe sets; 1,896 M. sativa EST/mRNA-based probe sets; and 8,305 S. meliloti gene prediction-based probe sets.
Instrument and Software Requirements
- GeneChip® Scanner 3000, enabled for High-Resolution Scanning* or GeneChip Scanner 3000 7G
- GeneChip® Operating Software (GCOS) v1.1.1, which contains the High-Resolution Scanning Update or later
*GeneChip Scanner 3000 High-Resolution Update is standard on all instruments shipped starting in September 2003 with serial number series 502. Previous versions (serial number series 501) will require the 00-0110 GeneChip Scanner 3000 High-Resolution Update to be installed.
For research use only. Not for use in diagnostic procedures.
Data Sheets
Medicago Genome Array (pdf, 92 KB)
Library Files
Medicago Genome Array (zip, 31 MB)
Manuals
Probe Set Data in MAGE-ML Format
3' IVT Express Kit User Manual (pdf, 1.6 MB)
HT 3' IVT Express Kit (pdf 5.93 MB)
Package Inserts
Medicago Genome Array (pdf, 492 KB)
Protocol, Long
Other
NetAffx Annotation Files
Medicago BLASTP annotations, CSV Format, Release 31 (2 KB 08/11/10)
Medicago BLASTP annotations, CSV Format, Release 32 (3 KB 06/09/11)
Medicago Annotations, MAGE-ML XML Format, Release 31 (40 MB 08/11/10)
Medicago Annotations, CSV format, Release 32 (4 MB 06/09/11)
Medicago Annotations, CSV format, Release 31 (4 MB 08/11/10)
Medicago Annotations, CSV format, Release 30 (4 MB 11/15/09)
Medicago Annotations, MAGE-ML XML Format, Release 30 (40 MB 11/15/09)
Medicago BLASTP annotations, CSV Format, Release 30 (2 KB 11/16/09)
Medicago Annotations, MAGE-ML XML Format, Release 32 (40 MB 06/09/11)
Sequence Files
Medicago Consensus Sequences, FASTA (16 MB 08/20/08)
Medicago Control Sequences, FASTA (56 KB 09/17/05)
Medicago Probe Sequences, FASTA (13 MB 08/20/08)
Medicago Probe Sequences, Tabular (12 MB 08/20/08)
Medicago Target Sequences, FASTA (9 MB 08/20/08)
Archived NetAffx Annotation Files
Medicago Annotations, MAGE-ML XML, Release 20 (39 MB 06/15/07)
Medicago Annotations, CSV, Release 20 (3 MB 05/31/07)
Medicago Annotations, BLASTP, Release 20 (26 KB 07/14/06)
Medicago Annotations, CSV format, Release 21 (3 MB 05/31/07)
Medicago Annotations, MAGE-ML XML format, Release 21 (39 MB 06/15/07)
Medicago BLASTP annotations, CSV format, Release 21 (23 KB 11/15/06)
Medicago Annotations, CSV format, Release 22 (3 MB 05/31/07)
Medicago Annotations, MAGE-ML XML Format, Release 22 (39 MB 06/15/07)
Medicago BLASTP annotations, CSV Format, Release 22 (24 KB 03/09/07)
Medicago Annotations, CSV format, Release 23 (3 MB 07/12/07)
Medicago Annotations, MAGE-ML XML Format, Release 23 (39 MB 07/12/07)
Medicago BLASTP annotations, CSV Format, Release 23 (24 KB 07/12/07)
Medicago Annotations, CSV format, Release 24 (3 MB 11/06/07)
Medicago Annotations, MAGE-ML XML Format, Release 24 (39 MB 11/06/07)
Medicago BLASTP annotations, CSV Format, Release 24 (4 KB 11/06/07)
Medicago Annotations, CSV format, Release 25 (3 MB 03/18/08)
Medicago Annotations, MAGE-ML XML Format, Release 25 (39 MB 03/18/08)
Medicago Annotations, CSV format, Release 26 (3 MB 07/08/08)
Medicago Annotations, MAGE-ML XML Format, Release 26 (39 MB 07/08/08)
Medicago Annotations, CSV format, Release 27 (3 MB 11/30/08)
Medicago Annotations, MAGE-ML XML Format, Release 27 (39 MB 11/24/08)
Medicago Annotations, CSV format, Release 28 (3 MB 03/12/09)
Medicago Annotations, MAGE-ML XML Format, Release 28 (40 MB 03/12/09)
Medicago BLASTP annotations, CSV Format, Release 28 (251 KB 03/04/09)
Medicago Annotations, CSV format, Release 29 (4 MB 07/01/09)
Medicago Annotations, MAGE-ML XML Format, Release 29 (40 MB 07/01/09)
Medicago BLASTP annotations, CSV Format, Release 29 (1 KB 07/01/09)
Required Products