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GeneChip E. coli Genome 2.0 Array
GeneChip E. coli Genome 2.0 Array
The GeneChip® E. coli Genome 2.0 Array contains probe sets to detect transcripts from the K12 strain of E. coli and three pathogenic strains of E. coli.
The GeneChip® E. coli Genome 2.0 Array contains probe sets to detect transcripts from the K12 strain of E. coli and three pathogenic strains of E. coli. Using the new E. coli Genome 2.0 Array, researchers can gain a comprehensive view of three pathogenic forms of E. coli while continuing ongoing research projects with the K12 strain.
The GeneChip E. coli Genome 2.0 Array includes approximately 10,000 probe sets for all 20,366 genes present in four strains of E. coli. Due to the high degree of similarity between the E. coli strains, whenever possible, a single probe set is tiled to represent the equivalent ortholog in all four strains. The GeneChip E. coli Genome 2.0 Array tiles probe sets over the entire open reading frame (ORF) of E. coli, includes over 700 intergenic regions, probes for various antibiotic resistance markers, and incorporates additional control and reporter genes from the previous generation E. coli array.
Application Notes
Microarray Applications in Infectious Disease (pdf, 252 KB)
Comparison Sheets / Array Comparisons
Comparison Spreadsheets User's Guide (pdf, 82 KB)
E. coli Antisense Genome to E.coli Genome 2.0, Best Match (zip, 159 KB)
E. coli Antisense Genome to E.coli Genome 2.0, Complex (zip, 513 KB)
E. coli Antisense Genome to E.coli Genome 2.0, Good Match (zip, 102 KB)
E. coli Antisense Genome to E.coli Genome 2.0, No Match (zip, 15 KB)
Data Sheets
E. coli Genome 2.0 Array (pdf, 86 KB)
FAQs
Library Files
E.coli Genome 2.0 Array (zip, 7.5 MB)
Manuals
Probe Set Data in MAGE-ML Format
Package Inserts
E.coli Genome 2.0 Array (pdf, 96 KB)
Other
NetAffx Annotation Files
E_coli_2 Annotations, CSV format, Release 30 (3 MB 11/15/09)
E_coli_2 Annotations, MAGE-ML XML Format, Release 30 (10 MB 11/15/09)
E_coli_2 BLASTP annotations, CSV Format, Release 30 (5 KB 11/16/09)
Sequence Files
E_coli_2 Consensus Sequences, FASTA (3 MB 08/20/08)
E_coli_2 Contol Sequences, FASTA (35 KB 10/26/04)
E_coli_2 Probe Sequences, FASTA (2 MB 08/20/08)
E_coli_2 Probe Sequences, Tabular (2 MB 08/20/08)
E_coli_2 Target Sequences, FASTA (2 MB 08/20/08)
Archived NetAffx Annotation Files
E_coli_2 Annotations, MAGE-ML XML, Release 20 (12 MB 06/15/07)
E_coli_2 Annotations, CSV, Release 20 (2 MB 05/31/07)
E_coli_2 Annotations, CSV format, Release 21 (3 MB 05/31/07)
E_coli_2 Annotations, MAGE-ML XML format, Release 21 (9 MB 06/15/07)
E_coli_2 Annotations, CSV format, Release 22 (2 MB 05/31/07)
E_coli_2 Annotations, MAGE-ML XML Format, Release 22 (10 MB 06/15/07)
E_coli_2 BLASTP annotations, CSV Format, Release 22 (291 KB 03/09/07)
E_coli_2 Annotations, CSV format, Release 23 (3 MB 07/12/07)
E_coli_2 Annotations, MAGE-ML XML Format, Release 23 (10 MB 07/12/07)
E_coli_2 BLASTP annotations, CSV Format, Release 23 (296 KB 07/12/07)
E_coli_2 Annotations, CSV format, Release 24 (2 MB 11/06/07)
E_coli_2 Annotations, MAGE-ML XML Format, Release 24 (10 MB 11/06/07)
E_coli_2 BLASTP annotations, CSV Format, Release 24 (298 KB 11/06/07)
E_coli_2 Annotations, CSV format, Release 25 (2 MB 03/18/08)
E_coli_2 Annotations, MAGE-ML XML Format, Release 25 (10 MB 03/18/08)
E_coli_2 BLASTP annotations, CSV Format, Release 25 (296 KB 03/18/08)
E_coli_2 Annotations, CSV format, Release 26 (3 MB 07/08/08)
E_coli_2 Annotations, MAGE-ML XML Format, Release 26 (10 MB 07/08/08)
E_coli_2 BLASTP annotations, CSV Format, Release 26 (2 KB 07/08/08)
E_coli_2 Annotations, CSV format, Release 27 (3 MB 11/30/08)
E_coli_2 Annotations, MAGE-ML XML Format, Release 27 (10 MB 11/24/08)
E_coli_2 BLASTP annotations, CSV Format, Release 27 (5 KB 11/24/08)
E_coli_2 Annotations, CSV format, Release 28 (3 MB 03/12/09)
E_coli_2 Annotations, MAGE-ML XML Format, Release 28 (10 MB 03/12/09)
E_coli_2 BLASTP annotations, CSV Format, Release 28 (6 KB 03/04/09)
E_coli_2 Annotations, CSV format, Release 29 (3 MB 07/01/09)
E_coli_2 Annotations, MAGE-ML XML Format, Release 29 (10 MB 07/01/09)
E_coli_2 BLASTP annotations, CSV Format, Release 29 (5 KB 07/01/09)
Required Products