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GeneChip Cotton Genome Array
GeneChip Cotton Genome Array
The GeneChip Cotton Genome Array is a single GeneChip brand array comprised of 23,9777 probe sets representing 21,854 cotton transcripts.
The GeneChip® Cotton Genome Array is a single GeneChip brand array comprised of 23,977 probe sets representing 21,854 cotton transcripts. Sequences used in the design of the array were selected from GenBank®, dbEST, and RefSeq, and were created from the Gossypium hirsutum UniGene database (Build 2, August 2006) and the Gossypium raimondii UniGene database (Build 2, September 2005). These sequences derive from the many contributors from the Cotton Community. Some select sequences were generously made publicly available prior to publication by a group within the Cotton Community specifically to enhance the design of the GeneChip Cotton Genome Array.
The GeneChip® Cotton Genome Array is based on EST sequences from four species of Cotton: Gossypium hirsutum, Gossypium raimondii, Gossypium arboretum, and Gossypium barbadense. The Array was designed in close collaboration with the Cotton Research Community as part of the Affymetrix® GeneChip Consortia Program.
For more information, please review the Package Insert (pdf, 209 KB).
For research use only. Not for use in diagnostic procedures.
Library Files
Cotton Genome Array (zip, 14 MB)
Manuals
HT 3' IVT Express Kit (pdf 5.93 MB)
Probe Set Data in MAGE-ML Format
3' IVT Express Kit User Manual (pdf, 1.6 MB)
Package Inserts
Cotton Genome Array (pdf, 209 KB)
Protocol, Long
Other
NetAffx Annotation Files
Cotton Annotations, CSV format, Release 30 (2 MB 11/15/09)
Cotton Annotations, MAGE-ML XML Format, Release 30 (17 MB 11/15/09)
Cotton BLASTP annotations, CSV Format, Release 30 (8 KB 11/16/09)
Sequence Files
Cotton Target Sequences FASTA Format (4 MB 11/09/06)
Cotton Probe Sequences, tabular format (5 MB 11/09/06)
Cotton Probe Sequences, FASTA format (5 MB 11/09/06)
Cotton Control Sequences FASTA Format (60 KB 11/09/06)
Cotton Consensus Sequences FASTA Format (7 MB 11/09/06)
Archived NetAffx Annotation Files
Cotton Annotations, MAGE-ML XML Format, Release 25 (18 MB 03/18/08)
Cotton Annotations, CSV format, Release 25 (3 MB 03/18/08)
Cotton Annotations, CSV format, Release 21 (3 MB 05/31/07)
Cotton Annotations, MAGE-ML XML format, Release 21 (18 MB 06/15/07)
Cotton Annotations, CSV format, Release 22 (3 MB 05/31/07)
Cotton Annotations, MAGE-ML XML Format, Release 22 (18 MB 06/15/07)
Cotton Annotations, CSV format, Release 23 (3 MB 07/12/07)
Cotton Annotations, MAGE-ML XML Format, Release 23 (18 MB 07/12/07)
Cotton Annotations, CSV format, Release 24 (2 MB 11/06/07)
Cotton Annotations, MAGE-ML XML Format, Release 24 (18 MB 11/06/07)
Cotton BLASTP annotations, CSV Format, Release 24 (3 KB 11/06/07)
Cotton BLASTP annotations, CSV Format, Release 25 (2 KB 03/18/08)
Cotton Annotations, CSV format, Release 26 (3 MB 07/08/08)
Cotton Annotations, MAGE-ML XML Format, Release 26 (18 MB 07/08/08)
Cotton BLASTP annotations, CSV Format, Release 26 (5 KB 07/08/08)
Cotton Annotations, CSV format, Release 27 (2 MB 11/30/08)
Cotton Annotations, MAGE-ML XML Format, Release 27 (17 MB 11/24/08)
Cotton Annotations, CSV format, Release 28 (2 MB 03/12/09)
Cotton Annotations, MAGE-ML XML Format, Release 28 (17 MB 03/12/09)
Cotton BLASTP annotations, CSV Format, Release 28 (4 KB 03/04/09)
Cotton Annotations, CSV format, Release 29 (2 MB 07/01/09)
Cotton Annotations, MAGE-ML XML Format, Release 29 (17 MB 07/01/09)
Cotton BLASTP annotations, CSV Format, Release 29 (6 KB 07/01/09)
Required Products