GeneChip Bovine Mapping 10K SNP Kit
The Affymetrix GeneChip® Bovine Mapping 10K SNP Kit contains approximately 10,000 SNPs that are multiplexed in a single assay.

The Affymetrix GeneChip® Bovine Mapping 10K SNP Kit contains approximately 10,000 SNPs that are multiplexed in a single assay. These SNPs allow researchers to perform linkage mapping studies on bovine breeds with no bias toward either beef or dairy.
The SNPs on the panel were validated across 15 Bos taurus and Bos indicus breeds and include several quantitative trait loci (QTLs) of interest to beef and dairy cattle breeders. The panel also includes SNPs from two African Sanga breeds.
The majority of the SNPs were discovered as part of the Bovine Sequencing Project and were validated at Affymetrix. In both the 10K and 25K SNP kits, genotype data is generated in a single multiplexed assay using proven molecular inversion probe (MIP) technology in combination with Affymetrix universal tag arrays, and scanned on an Affymetrix GeneChip® Scanner 3000 TG System.
Literature
Khatkar M. S., et al. A Primary Assembly of a Bovine Haplotype Block Map Based on a 15,036-Single-Nucleotide Polymorphism Panel Genotyped in Holstein-Friesian Cattle. Genetics 176:763-772 (2007).
Additional Materials
For research use only. Not for use in diagnostic procedures.

Assay Panel Files
Assay Panel File, Bovine Mapping 10K SNP Kit (zip, 159 KB)
Brochures
Data Sheets
Data Sheet, Bovine Mapping 10K SNP Kit (pdf, 98K)
Manuals
Targeted Genotyping System Site Preparation Guide (pdf, 892 KB)
Targeted Genotyping System User's Guide (pdf, 4.04 MB)
Targeted Genotyping Analysis (GTGS) User's Guide, includes TG protocol (pdf, 1.9 MB)
Quick Reference Cards
Targeted Genotyping Quick Reference Card, includes TG Protocol (zip, 1.62 MB)
User Bulletin, Affymetrix Targeted Genotyping System (pdf, 69 KB)
Safety Data Sheets
Targeted Genotyping Wash Solution B (pdf, 26 KB)
Bovine Mapping 10K SNP Kit (pdf, 82 KB)
Targeted Genotyping Wash Solution A (pdf, 26 KB)
White Papers
Targeted Genotyping Algorithm Enhancements for Release 1.5 (pdf, 21 KB)
Other
Custom Panel Design Request Form (zip, 12 KB)
Custom Panel Design Guide (zip, 143KB)

Required Products
Related Products
| Targeted Genotyping Services |



