To search for SNPs near a microsatellite, select the first option below and
enter a microsatellite ID with a corresponding range of bases upstream and
downstream. SNP Finder will provide you with a list of all of the SNPs on
the array within that location.
To search for SNPs between microsatellites, select the second option below
and enter the two microsatellite IDs in the text boxes provided. This will
return a complete list of the SNPs on the array between those two markers.
1. microsatellite marker with an offset (first radio button) id is D12S100 and offset 1000000.
2. Two microsatellite markers (second radio button)
A search may not return any results if the two markers are not on the same chromosome:e.g. D10S1099 D9S186E
The UCSC Microsatellite annotation process is described here.
Search on probe sets for Genotyping Catalog Arrays.
Use the SNP Finder to search for SNPs near or between specific microsatellite
markers or short tandem repeats (STRs) from the UCSC Microsatellite data track.