To search for SNPs near a microsatellite, select the first option below and enter a microsatellite ID with a corresponding range of bases upstream and downstream. SNP Finder will provide you with a list of all of the SNPs on the array within that location.
To search for SNPs between microsatellites, select the second option below and enter the two microsatellite IDs in the text boxes provided. This will return a complete list of the SNPs on the array between those two markers.
1. microsatellite marker with an offset (first radio button) id is D12S100 and offset 1000000.
2. Two microsatellite markers (second radio button) D10S1099 D10S1149
A search may not return any results if the two markers are not on the same chromosome:e.g. D10S1099 D9S186E
The UCSC Microsatellite annotation process is described here.
Search on probe sets for Genotyping Catalog Arrays. Use the SNP Finder to search for SNPs near or between specific microsatellite markers or short tandem repeats (STRs) from the UCSC Microsatellite data track.