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Sample data generated using the single strand amplified whole transcript protocol.
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Exon 1.0 ST Array Sample Data
Sample data from the Human, Mouse and Rat Exon 1.0 ST Arrays, including: |
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Tissue panel data sets on all three arrays |
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Tissue mixture data set on both the Human Exon 1.0 ST Array and the HG-U133 Plus 2.0 Array |
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Small colon cancer data set on the Human Exon 1.0 ST Array |
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Gene 1.0 ST Array Sample Data
Sample data from the Human, Mouse and Rat Gene 1.0 ST Arrays, including:
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Tissue panel data sets on all three arrays |
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Tissue mixture data set on the Human Gene 1.0 ST Array, the Human Exon 1.0 ST Array and the HG-U133 Plus 2.0 Array |
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Genome-Wide Human SNP Array 6.0 Sample Data Set |
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Genome-Wide Human SNP Array 5.0 Sample Data Set |
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Genotype and Allele Frequency Data |
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Mapping 500K HapMap Genotype Data Set |
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Mapping 500K Sample Data Set |
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Mapping 100K HapMap Trio Dataset |
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Mapping 10k Sample Data |
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Genotyping Console 2.0 - Cytogenetics Sample Data
Five cytogenetic samples have been analyzed using the Genotyping Console 2.0 Copy Number and LOH algorithms. These files represent cases from Duchenne's Muscular Dystrophy (MD), DiGeorge Syndrome, and Beckwith-Wiedemann Syndrome.
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Copy Number Analysis Tool Reference Data Set
This resource center
is designed to provide the reference data set used in development of the 10K and 100K CNAT 3.0 Reference Set.
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Copy Number Analysis Sample Data
A collection of sample data using both the Affymetrix Human Mapping 100K and 500K arrays to produce estimates of genomic copy number. |
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Tiling Array Sample Data |
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These data leverage various Tiling Arrays with the CHiP on chip assay to identify genomic binding locations of DNA binding proteins of interest.
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Data is available from: Carroll J. S., et al. Genome-wide Analysis of Estrogen Receptor Binding Sites. Nature Genetics 38(11):1289-97 (2006). Affymetrix thanks the laboratories of Shirley Liu and Myles Brown for permission to redistribute these data.
The data is hosted on the Affymetrix Secure File Exchange due to its size. Please email webmaster@affymetrix.com for access to this data set.
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High Throughput Plate Data
Zipped GCO EXP/CEL files used in performance whitepaper. |
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3' Expression Sample Data
Zipped files with sample GeneChip probe array data (.exp, .dat, .cel., .dat, .rpt, files) for a variety of expression and genotyping arrays.
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Latin Square Data
Zipped collection of files of 3' Expression Data from Human U95 and U133 array containing spikes at known concentrations for the purpose of algorithm development. |
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Human Mitochondrial Resequencing Array 2.0 (zip, 25.4 MB)
This dataset contains 14 Mitov2 array .cel files generated from the Human Mitochondrial Resequencing Array 2.0. The probe array files represent 3 sets of CEPH trios including 2 sets of technical replicates and 2 human mito standard samples.
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Samples of Affymetrix data hosted specifically for use by software
developers who wish to integrate with the Affymetrix platform. |
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Children's National Medical Center |
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EBI Array Express |
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NCBI's Gene Expression Omnibus (GEO)
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Publicly Hosted Sites with Affymetrix Data
To include other publicly available sites on this page, please email devnet@affymetrix.com |